Flavihumibacter fluvii: KJS93_13490
Help
Entry
KJS93_13490 CDS
T07958
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
flc
Flavihumibacter fluvii
Pathway
flc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
flc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KJS93_13490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
flc03400
]
KJS93_13490 (mfd)
Enzymes [BR:
flc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KJS93_13490 (mfd)
DNA repair and recombination proteins [BR:
flc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KJS93_13490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ULQ54847
LinkDB
All DBs
Position
complement(3086484..3089897)
Genome browser
AA seq
1137 aa
AA seq
DB search
MNLEHLLEQYLNDGRLFQLADKLTLSQPQHIVLKNLTGSSPEFLVTAIFKHSITEQVNHV
VILNDAEEAAYFHNTLENLSGALDLFYFPSSFRTKKNYRQLNSSHVMLRTETLTRLTAGG
NKKMVVTYPEALFEKVVRPETLSGNIIRVKVNDVLDTVKLYEQLTDAGFNRTDFVYEPGQ
FAVRGGIIDIYSFGNEKPYRIELFGNDVDSIRLFDPETQLSERKLLQISIIPNLQAEFTE
EATVSIFDFLPPNTVVWMNDWNFVKERIQLQEEELELFLARNEGVVYKEEEEEDKLVRKS
IDKKEFETAGGIEKKLQQRHIVEMEGYSDFPGGLVTEISFHTKPQPSFNRQFELLIKDFQ
QWEKKGFSLYLFAENPKQLERLHSIFEDLKAAIHFTPVPVAIHGGFIDEDLKLVCYTDHQ
VFQRYHKYKVKQAYNKNKALTLRTLRELQPGDFVSHIDHGVGVYSGLQKLEVNGKLQEAV
RIIYKDSDILYVNINSLHKISKYTGKEGTVPKVNKLGSDAWAKLKEKTKTRVKEIAFDLI
RLYAQRKAQQGFQHTPDTYLQTELEASFIYEDTPDQSKATADVKKDMESPSPMDRLVCGD
VGFGKTEIAIRAAFKSVVDGKQAAVLVPTTILAFQHYKTFSERLKDFPVTVDYINRFKSS
KEKKDTLKKLEEGKVDIIIGTHSILGKEVKFKDLGILVIDEEQKFGVAHKEKIKTLRTNV
DCLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPIQTEVQVYNEDFIRDAIYFETERG
GQVFFIHNRIHGLPEMAAMIQSHCPDLSIGYAHGQMEGHILEERIMDFIDKKYDVLVCTN
IVESGVDIANVNTIIVNNAHQFGLSDLHQLRGRVGRSNRKAFCYLLAPPMSTLPSDSKKR
LQTLEQHSELGSGFQIAMRDLDIRGAGNMLGGEQSGFMAEIGFEMYQKILDEAIRELKRT
SFRELFKEEIARQEDYVQDCTIDTDLEVLIPDDYVESITERLSLYTRLDNCENEEELVAF
HTEMNDRFGPVPQQVEDLFDAVRVRKLSVALGFEKLLLRDTVLKCFFINKPDSPYFESDL
FKRILDYLQTHTNKARLKQSGKNFLLVIEGMKDMKTMLQFLQKMNRKVNEAELEAVG
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggaacatttactggagcagtacctgaatgatggccgcctttttcaattggcg
gacaagctcactttgtcccaaccccagcatatcgtactcaaaaacctgaccggcagctcc
ccggaatttttagtaaccgccatttttaagcactccataactgaacaggtcaatcatgtg
gtcatcctgaatgatgcggaagaagcagcctacttccacaatacccttgaaaaccttagt
ggcgccctggacctcttttattttccatcttcgttccggacaaaaaagaactaccggcag
cttaacagcagtcatgtgatgttgcgcacggaaaccctgacccggcttaccgcaggtggt
aataaaaaaatggtcgttacttatcccgaagcattgtttgaaaaagtagtgcgccccgag
acgctcagcggtaatatcattcgggttaaagtgaatgatgtactggatacagttaaactt
tacgaacaattgacggatgccggatttaaccgcacggattttgtttatgaacccggacaa
tttgctgtgcgtggcggtattattgatatctattcatttggaaacgaaaaaccttaccgg
atcgaattatttgggaatgatgtcgattccatccggctttttgatccggaaacccagctc
agcgaacgaaaactgctgcagatcagcattattcccaatctccaggcagaatttacagaa
gaagccacagtttcaatttttgatttccttccgccaaatacggtggtttggatgaacgac
tggaattttgttaaggaaaggatccagttacaagaagaggagctcgaactgttcctggcc
cgcaatgagggcgtggtgtataaagaagaggaggaagaagataaactggtgcggaaatcg
atcgataaaaaagaatttgaaacggctggtggaattgaaaaaaagctgcagcaacggcat
atagttgaaatggagggctatagtgatttccccggtggactggtaacggagattagtttc
cacacaaaaccacaaccttcatttaaccggcagtttgaattgctgataaaggattttcaa
caatgggagaaaaaagggttttccctatacttgtttgcagaaaatccaaagcagctggag
cgactgcacagtatttttgaagacctgaaggctgcaattcattttacgccggtacctgtg
gccattcacggcggttttattgatgaggacctgaagttggtttgttatactgatcaccag
gtgttccagcgctaccataaatacaaagtaaagcaggcctataataaaaacaaagcacta
acgctacgcacgcttcgtgaattacagcccggcgatttcgtatcccacatagatcatggt
gttggggtatatagcggactgcaaaaactggaagtcaacgggaaattacaggaagctgta
aggatcatctataaagacagtgatatcctgtacgtaaacattaattcacttcataagatt
tcaaaatacacaggtaaggaaggaacggtgcctaaggtgaataaactgggtagtgatgcc
tgggccaaattgaaggagaaaaccaagaccagggtgaaggaaatcgccttcgaccttatc
cggttatatgcgcaacggaaagcccagcaaggctttcagcatacgcctgatacctacctg
caaacagaactggaagcttcttttatctacgaagatacccccgaccagagtaaagctacc
gcggatgtgaaaaaggatatggagtccccatcacccatggatcgcctggtttgtggcgat
gtgggttttggtaaaacagagatcgctatcagggcagcattcaaatctgttgtggatggg
aaacaggctgccgtgcttgtaccaacgactatcctggccttccagcattataagaccttt
tcagaacgcctgaaggattttccggtaacggttgattatatcaaccggttcaaaagcagc
aaggagaaaaaagataccctgaagaaactggaggaaggtaaggtggatatcatcattggt
acccattccattttgggaaaggaagtaaagtttaaggacctgggcatactggtgattgat
gaggaacagaaatttggcgttgcccataaagaaaagataaagacacttagaacgaacgta
gactgcctcacactaacggccacgccaatcccaaggacactgcagttcagcctgatgggc
gcgcgcgacctgagtatcatcaataccccgccacccaaccggcaacccatccagacagaa
gtacaggtgtataatgaagattttatcagggatgccatttattttgaaacggaacgcggc
ggacaggtattctttatccataacaggattcatggacttcccgagatggctgcaatgata
caaagtcattgtcctgatttaagtattggttatgcccacggccagatggagggacatatc
ctagaagagcggatcatggattttatcgacaaaaaatacgatgtgctggtctgcaccaat
attgttgaaagcggcgtggatattgcaaatgtgaatacaattattgtcaacaatgcgcac
cagtttggactaagtgacctgcaccagttgcgtggccgggtgggccgtagtaaccgtaaa
gctttctgttatttgttggcaccaccaatgagtacgctgccatcggattcgaaaaaaagg
ctgcagacgcttgagcagcatagtgaattgggtagcgggtttcagattgccatgcgtgac
cttgacatcaggggggcaggtaatatgctgggtggggagcaaagcggttttatggcagag
atcggtttcgagatgtaccagaaaatcctggatgaagccatcagggaattgaagcgtaca
tcttttagggaattgttcaaggaggagattgccaggcaggaagattatgtgcaggattgc
accattgataccgatctggaagtattgattcccgacgattatgtagaaagtataacagag
cggttatcattgtacacgaggctggataattgtgaaaatgaagaagaacttgtcgcattt
catactgagatgaatgaccgcttcggacctgttccgcagcaggtagaggacctgttcgat
gcagtaagggtccgcaaattatcagtagcattgggatttgaaaaattgttgctgcgggat
accgttttgaaatgtttttttatcaataagccagactctccatattttgaatcggacctg
tttaagcgaattttagattacctgcaaacgcatactaataaggcaaggctgaaacaaagc
ggtaaaaatttcctcctggttattgagggcatgaaggatatgaaaaccatgttacagttc
ctgcaaaaaatgaaccggaaggtaaatgaggccgagctggaagccgtaggctaa
DBGET
integrated database retrieval system
