Flavihumibacter fluvii: KJS93_15180
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Entry
KJS93_15180 CDS
T07958
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
flc
Flavihumibacter fluvii
Brite
KEGG Orthology (KO) [BR:
flc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
flc03009
]
KJS93_15180 (rlmD)
Enzymes [BR:
flc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KJS93_15180 (rlmD)
Ribosome biogenesis [BR:
flc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KJS93_15180 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
PrmA
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
ULQ51430
LinkDB
All DBs
Position
complement(3488763..3490166)
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AA seq
467 aa
AA seq
DB search
MRKKNITLEKVSVEDYAAEGKALSRVDGKVIFIEGAVPGDVVDLQLTKNKKDWAEGKVTL
VHQYSKDRVDPFCEHFGVCGGCKWQMLPYEKQLHYKQQEVEQHLRRIGKVALPAIEPILG
CAETRYYRNKLEFTCSNRRYLLPDEIKTDREIAPENAIGFHVPRLFDKVIDIYTCHLMHE
PANLVRNTIRDYAVANGLSYYDIREHHGFLRTVIVRVLTTGEVMVNVVLGKEDQSARKAL
LDHLLAKVPGITTLLYTINQKWNDSLFDQEPVTYYGKGFALEKLEGFQFKIGPKSFFQTN
TRQGEQLYRVAREFAELTGRETVYDLYCGTGSIGIFVSGGAAKVIGVEVVAEAIEDAKVN
AALNEIVHARFFAGDVIDVCRDDFFAEHGRPDVVITDPPRAGMHEKLVHKLLEMEAPVIV
YVSCNPATQARDLNLLDAKYAVTRVRPVDMFPHTHHIENVVQLKLRK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaaaagaatattacgctggaaaaagtatctgttgaagactatgctgctgaagga
aaagcgctgagccgggtagatggcaaggtcatctttatcgaaggcgccgttccgggggat
gtagtggacctgcagctgaccaaaaacaagaaagactgggctgaaggtaaagtgacactg
gtgcaccagtattccaaagaccgggtagatcctttttgcgaacattttggagtttgtggc
ggttgcaagtggcagatgctgccctatgaaaagcaattgcactacaagcaacaggaagtt
gagcagcatttgaggcggatcggaaaagtggctttacccgccattgaacccatcctgggt
tgtgccgaaacccgctattaccgcaataaactggagtttacctgtagtaaccggcggtat
ttattacctgatgagataaaaacagaccgggaaatagcccccgaaaatgccattggtttt
catgtaccgcgcctttttgataaggtaatagatatttatacctgccacctgatgcatgag
ccggcgaacctggtcaggaataccattcgcgattatgcggttgccaatgggctcagctat
tatgatatccgggaacaccatggatttctgcggacggtaattgtacgggttttgacaacc
ggagaggttatggtaaatgtggttttaggcaaagaggatcagtcagcccgcaaggccctg
ctggatcacctgctggctaaagttcccggaatcactaccttgttgtatacgatcaaccaa
aaatggaacgacagcctgtttgaccaggaaccggttacttattatggtaaggggtttgcg
ctggagaagctcgaaggctttcaattcaaaattggcccgaagtcattcttccagacgaat
acaaggcaaggtgaacaactgtaccgggtcgcccgggaatttgcagaactaaccggcagg
gaaactgtttatgacctgtattgcggcacgggtagtattggtattttcgtaagcggcggt
gctgcaaaagttataggggttgaagttgtggccgaagccattgaagatgcaaaagtaaat
gctgcccttaatgaaattgttcatgcccggttttttgccggtgatgtaattgatgtttgc
agagatgatttttttgcagaacatgggcggccggacgtggtcattaccgatcccccgagg
gcaggtatgcatgagaaactggtgcataaattattggagatggaagcaccggtgattgta
tatgtgagttgtaatccggccacacaggcacgtgacctgaacctgctggatgctaaatat
gccgttacgagggtgcggccggtggatatgttcccgcatactcaccatattgaaaacgta
gtacagttaaaattgaggaaataa
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