Flagellimonas sp. MMG031: ABNE31_15980
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Entry
ABNE31_15980 CDS
T10636
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fld Flagellimonas sp. MMG031
Pathway
fld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABNE31_15980 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fld03021
]
ABNE31_15980 (rho)
03019 Messenger RNA biogenesis [BR:
fld03019
]
ABNE31_15980 (rho)
Transcription machinery [BR:
fld03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABNE31_15980 (rho)
Messenger RNA biogenesis [BR:
fld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABNE31_15980 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
Presenilin
Mor
DDHD
AAA
DUF4100
Motif
Other DBs
NCBI-ProteinID:
XBQ23095
UniProt:
A0AAU7MXP4
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All DBs
Position
3513344..3514957
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AA seq
537 aa
AA seq
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MFEISDLKAKKLPELQEIAKELNVPKFKTLKKLDLVYQILDVQASNPKAVAETVATTTAD
DKPEPKQKRARTPRPKKTEANDNKGDAPEKAPQKREPRNKKDDSKGQSPQQKKDNKPQNN
NNNNSQKNQSNRRSNNNNQQNKGHHDKKNSNFDKDLKNRYKEPEFEFDSIIESEGVLDIM
QDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKSGDTILGNIRPPKEGEKYFPLIKVNK
INGLDPQVVRDRVAFEHLTPLFPKEKFKLAEKQSTISTRIMDLFSPIGKGQRGMIVSQPK
TGKTMLLKDIANAIAANHPEVYQIILLIDERPEEVTDMQRNVRGEVVASTFDKEATEHVR
VANIVLDKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALHKPKRFF
GAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRRISNRRIFPAIDLI
SSSTRRDDLLLDENTIQRMWILRKYLADMNPIEAMEFMEQRIKQTKNNEEFLLTMNE
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagatttcagatctaaaagctaaaaagcttcctgagttgcaagagattgcaaaa
gaactcaatgttcccaaattcaaaaccttgaaaaaactggacctggtataccaaatattg
gatgtgcaggcctccaacccaaaagccgtggcagaaaccgtagccacaacaactgcggac
gacaaaccagagccaaaacaaaaaagagccaggacccctcgtccgaaaaagaccgaggca
aatgacaacaaaggggatgcgcccgaaaaagctccacagaaaagagagcctcgaaacaaa
aaggatgattccaaagggcaaagtccgcaacaaaaaaaggacaacaaaccccagaacaac
aataataacaactcccagaagaaccaaagcaacaggagaagcaacaataacaaccaacaa
aataagggccaccacgacaaaaagaacagcaattttgacaaggacctgaaaaataggtat
aaagagcctgagttcgaatttgacagcattatcgaaagtgaaggtgtactggacattatg
caggatgggtacggattcctaaggtcttccgattacaattacctttcttctcccgacgat
atttacgtttcccaatcacaaatacgattgttcggactaaaatccggcgacaccattttg
gggaacatccgccctcccaaggaaggggaaaaatattttccattgatcaaggtgaacaaa
atcaatggcctagatccccaagtagtgagggacagggtagcatttgagcaccttacgcca
ttgtttcctaaggaaaagttcaaattggcggaaaaacagagtacgatttcaaccagaatc
atggatttgttctcccctattggaaaaggacaaaggggaatgatcgtttcccagcccaaa
acgggtaagaccatgttgttgaaggatattgccaacgctattgccgctaaccatccagag
gtatatcaaatcatcctattgattgatgaacgcccagaagaggttaccgatatgcaacgt
aacgtgcgtggcgaggtggtagcttctacttttgacaaagaggccaccgaacacgttagg
gttgccaacattgttttggacaaagcgaaaagattggtggaatgcggtcacgatgtagta
atccttttggattccatcacccgtttggcgagagcctacaacaccgtgcagccagcttct
ggtaaggttttgagtggtggtgtggatgccaatgcactgcataaacccaaacgtttcttt
ggagctgcccgtaatatcgaaaatggaggttcactatccattattgctacggcattgaca
gagaccggttccaaaatggacgaagttatttttgaagaattcaagggtacaggtaatatg
gaacttcaattggatagaagaatttccaaccgaaggattttccctgccatcgaccttatt
tcttcatcaacacgaagggacgaccttctgttggacgaaaatacgattcaacgtatgtgg
atcttgcgcaagtatcttgccgacatgaacccaattgaagccatggagtttatggagcag
cgcataaagcaaaccaagaacaacgaggagtttttgctcaccatgaacgagtaa
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