Ferribacterium limneticum: KI610_03365
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Entry
KI610_03365 CDS
T07599
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fle
Ferribacterium limneticum
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fle03019
]
KI610_03365 (hrpA)
Enzymes [BR:
fle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KI610_03365 (hrpA)
Messenger RNA biogenesis [BR:
fle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KI610_03365 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
T2SSE
NACHT
AAA_25
AAA_23
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
UCV19638
LinkDB
All DBs
Position
700793..704749
Genome browser
AA seq
1318 aa
AA seq
DB search
MKQEKPARAAELAENLCLSSDLKRLRGMQRELLRSTGNKREKLQADLAALLERSRAAVAE
RRARLPKPEFQSDLPVNERRADIADLIVKNQVVIVCGETGSGKTTQLPKICLDLGLGARG
LIGHTQPRRLAARSVATRLAQELKTQVGAGVGVKIRFQDRSSPESWVKLMTDGILLAESQ
SDPYLNAYEAIIIDEAHERSLNIDFLLGYLKQLLAKRPDLKVIITSATIDADRFSTHFTV
NGKKAPIIEVSGRLYPVEVRYRPVEDLETKDDERDLYDAIVDAADEVARLGSGDILVFLP
GEREIREAAEALRKHALARPGLSSAHAPEILPLFSRLSAGDQDRIFKPSGGQRRIVLATN
VAETSLTVPGIRYVIDTGLARVKRYSYRNKVEQLQIEKVSQAAARQRAGRCGRVAAGVCI
RLYDEPDFNARPPFTDPEILRSSLAGVILRMKSLRLTDVESFPFIEPPPAKAIADGYALL
QELGALDDDNVLTPIGASLAKLPLDPRIGRMLVAARDLGCLKEVMVIAAGLSAQDPRERP
QDRQQAADEKHKLFADEKSEFMGWWKLWNWFQNAVEHKKSNKQLIDTCHAHFLSYLRLRE
WREVHGQLHAMVTELGWKESELPGTYDAIHQALLAGLLGNLGCKADESGFYLGARGIRYL
IHPSSPLQKKAGKWIMAAEITETTRLFGRCVARIEPDWLEKVGAHLIKRQYFDAHWEKKS
MQVSGWERTTLYGVVINPKRRIHYGPMAPAESREIFIRQGLVSEEIDEAFAKRWPFFQHN
QKLIREIEHLEHKQRRQDVLVDDELIFAFYDSIIPEGIHNGATFDHWRKEAERETPKLLY
LSKDDLMRHSAAGVTTEAFPHHLKVGGVDYTLTYHFEPGSPRDGVTLTLPLAQLNQIPVL
RMEWLVPGLLKEKLVQLIKTLPQKIRAKVVPVPEFVEEFMATVAGNEKKMNQGLITPLID
HILEARGLNARGWAVTPDSFRPDALPAHFSMNYKLIDEHGRQLDMNRSLVALRAEWGKQA
KDEFAELHETPSEFTNLTDWTFGELPELMEVPVAGQTVLGYPGLTDDGESVSLKVFDSAE
EAAAAHRAGLLRLFMLQFRDQVKYFDKNIPGLSQMAMQYMALGSADDLKNQIVALTFERA
CLTEPLPTTPNAFKSRCGDSKARLGLIMQEVCRLVGTVLTEWQAVIKKLPAFKAQAAAVA
DIEAQLKRLMGKNFLVDTPFDRLQHYPRYFKAIVVRLDKLKANPGRDAQLMVEYTPLWTN
YERRAIQLAKLGTLDPQVEQFRWLLEELRVGLYAQELRTPVPVSSKRLQKQWEGIKNG
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaagagaaacccgcccgcgctgccgaactcgccgaaaacctttgtctgagcagc
gatctgaagcgcctgcgcggcatgcagcgcgaattgctacggtcaaccggaaataaacgc
gaaaaactgcaagccgatctggcagccttgcttgaacgttcgcgcgcggccgtggctgaa
cgccgggcccggctaccgaagccggagttccagagcgacctgccggtcaatgaacggcgg
gccgacattgccgacttgattgttaaaaatcaggtcgtcatcgtctgcggcgaaacgggc
tcgggcaagacgacgcagttgccgaaaatctgtctcgatctcggccttggcgcccgcggc
ctgatcggccacacgcagccgcgccggctggcggcacgttcggtggcgacgcggttggcg
caggagttgaagacgcaggttggcgccggtgtcggtgtcaaaatccgcttccaggatcgg
tcgtccccggagagttgggtcaagctcatgaccgatggcatcctgctcgccgagtcgcag
tccgatccctacctgaacgcctacgaggcgatcatcatcgatgaggcccacgagcgcagc
ctcaatatcgatttcctgctcggctatctcaagcagttgctggccaagcggccggatctc
aaggtcatcatcacctcggcgaccatcgatgccgaccgtttttcgacgcatttcacggtc
aacgggaaaaaagcgcccattatcgaagtctccggccggctctacccggtcgaagtgcgt
taccgcccggtcgaagatctcgaaacgaaagacgacgagcgcgatctctacgacgccatc
gtcgatgccgccgacgaagtggcgcggctgggtagcggcgacatcctcgtcttcctgccc
ggcgaacgggaaatccgcgaggcggcggaggcattgagaaaacatgcgctggctcgcccc
ggtttgtcgagcgcccacgccccggaaatcctgccgcttttctcgcgcctgtcggcaggt
gatcaggaccgtatcttcaagccttccggcggccagcggcgcatcgtgctggccaccaat
gtggccgaaacctcgctgaccgtcccgggcatccgctacgtcatcgacaccgggctggcg
cgggtcaagcgttactcctaccgcaacaaggtcgagcagttgcagatcgaaaaggtctcg
caggccgcggcgcgccagcgggccgggcgttgcggccgggtggcggcgggtgtctgcatc
cgtttgtacgacgagccggatttcaatgcccggccacccttcaccgatccggaaatcctc
cgttccagcctggccggcgtcatcctgcgcatgaagtcgctgcgcctgaccgatgtcgag
agcttcccgttcatcgagccgccgccggccaaggccatcgccgacggctacgcgctgctg
caggaactcggtgcgctcgatgacgacaatgtgctgacgccaatcggcgcgtcgctggcc
aagctgccgctcgacccgcgcatcggccgcatgctcgtcgcggcgcgcgatctcggctgc
ctcaaggaagtcatggtcatcgccgccggcctgtcggcgcaagacccgcgcgaacggccg
caggatagacagcaggcggcggacgaaaagcacaagttgtttgccgacgaaaagtcggaa
ttcatgggctggtggaaactgtggaactggttccagaacgccgtcgaacacaagaaatca
aacaagcagttgatcgatacctgccacgcccatttcctttcttatttgcgcctgcgcgag
tggcgcgaggtgcacggccagttgcatgcgatggtgacggaactgggctggaaggaaagc
gaactgcccggcacctacgatgccatccatcaggcgctgctggccggcctgttggggaat
ctcggctgcaaggccgacgagtccggtttctacctcggcgcgcgtggcatccgctacctg
attcacccctcgtcgccactgcaaaagaaggcaggcaagtggatcatggctgccgagatc
accgagacgacgcggctgttcggccgctgcgtcgcccgcatcgaaccggactggctggag
aaagtgggcgctcacctaatcaagcgccagtacttcgacgcccactgggaaaagaagtcg
atgcaggtgtcgggctgggagcgcacgacgctttacggcgtggtcatcaacccgaaacgg
cgcatccattacggcccgatggcgccggccgagtcccgtgaaatcttcatccgccagggg
ctggtcagcgaggagatcgacgaggcgttcgccaaacgctggcccttcttccagcacaac
cagaagctgatccgcgagatcgagcacctcgaacacaagcagcgccggcaggacgtgctg
gtcgatgacgaactgatttttgcgttttacgactcgatcatccccgaaggcatccacaac
ggcgccaccttcgaccactggcgtaaggaagccgaacgcgagacgccgaagctgctttac
ctgtcgaaagacgacctcatgcgccactcggcggccggcgtgacgaccgaggctttcccg
catcacctcaaagtcggtggcgtcgattacacgctgacttaccacttcgagccgggttcg
ccgcgcgatggcgtgacgctgaccttgccgctggcgcaactcaaccagattcccgtgctc
cgcatggagtggctggtgcccgggctgctcaaggaaaagctggtgcagctgatcaagacc
ttgccgcagaaaatccgggcgaaagtggtgccggtgccggaattcgttgaagaattcatg
gctaccgtagccggcaacgaaaagaagatgaatcagggcctgatcacgccgctgatcgac
cacatcctcgaagcgcgcggcctaaatgcccgcggctgggccgtgacacccgactccttc
cggcccgacgcgttgcccgcccacttctcgatgaactacaaactcatcgacgaacacggc
cgccaactcgatatgaaccgcagcctcgttgccttgcgcgccgagtggggcaagcaggcc
aaggacgagttcgccgagttgcacgaaacgccgtccgaattcaccaacctgaccgactgg
actttcggcgagttgccggagcttatggaagtcccggtcgccggccagactgtgctcggc
tacccgggcctgaccgacgatggcgagagcgtcagcctcaaggttttcgactccgccgag
gaagctgccgccgcccatcgcgccggcctgctccgcctgttcatgctgcagttccgcgat
caggtgaagtatttcgacaagaacatccccggcctgagccagatggccatgcaatacatg
gcgctgggcagcgccgacgacctcaagaaccagatcgtcgccctgactttcgagcgcgcc
tgcctgaccgagccgctgccgacgacgccgaatgccttcaagagccgttgcggcgacagc
aaggcgcggctcgggctgatcatgcaggaggtctgccggctggtcggcaccgtgctgacc
gaatggcaggccgtcatcaagaagctgccggccttcaaggcgcaagctgcagcggtcgcc
gacatcgaggcgcaactgaagcggctgatgggcaagaattttctggtcgacacgcccttc
gatcgcctgcagcactatccgcgctacttcaaggccatcgtggtgcgtctcgacaagctc
aaggccaacccggggcgcgatgcgcaactgatggtcgaatacacgccgctatggaccaac
tacgaacgccgcgccatccaactcgccaagctcggcacgctcgatccgcaggtcgaacag
ttccgctggttgctcgaggaattacgcgtcggcctctacgcgcaggagttgcggacgccg
gtgccggtttcctccaagcgcctgcaaaaacaatgggaaggaatcaagaatgggtga
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