Ferribacterium limneticum: KI610_05620
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Entry
KI610_05620 CDS
T07599
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fle
Ferribacterium limneticum
Pathway
fle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI610_05620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fle03019
]
KI610_05620
03009 Ribosome biogenesis [BR:
fle03009
]
KI610_05620
Enzymes [BR:
fle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI610_05620
Messenger RNA biogenesis [BR:
fle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI610_05620
Ribosome biogenesis [BR:
fle03009
]
Prokaryotic type
rRNA helicases
KI610_05620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Bac_DnaA_C
Motif
Other DBs
NCBI-ProteinID:
UCV20051
LinkDB
All DBs
Position
complement(1149981..1151795)
Genome browser
AA seq
604 aa
AA seq
DB search
MSSTPDSFADLGLSETLLKTLIEIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAF
ALPLMEQIDVKLMKPQALILTPTRELAIQVAEALQTYAKNLPGFHVLPIYGGQSYTIQLK
QLSRGAHVIVGTPGRVMDHLERKTLNLDNLKTMVLDEADEMLRMGFIDDVEWILERTPAQ
HQTALFSATMPEQIRRVAQKYLVEPREIKIKSATATVAAIRQVYWQVSGMHKLDALTRIL
EVEEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALDIV
IATDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPREIRMLRT
IERATRSPIAPLTLPSRADVTNKRVSDFKQKVVEVLNAEGLDFFSNIVSQIAEEQNVGAE
EVAAALAMMAQEGKPLQIAGEDPRPAPAPSFDSRDSRPRPGSFDRDERKPRADRGDKPSF
ESRGERPRREERPTRSAPPSGDMVRYRIDVGRDHGVQVKDIVGAIANEAGIESRFIGRIA
LYDESSTVELPAGMPGEASNALKRTRVRGVPINLRPDEGRPDGGASSERKFDGERSFKKK
SFDR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctactcccgacagcttcgccgatctcggcttaagcgaaacgctcctcaaaaca
ctcatcgaaatcggctacgaaacaccgtcgccgatccaggcccaatgtatcccggtcctg
ctcgaaggtcatgacctcatcggcatggcccagaccggcaccggcaagaccgccgcgttt
gccctgccgctcatggaacagatcgacgtcaagctgatgaagccgcaagcgctgatcctg
acgccgacgcgcgaactggccatccaggttgccgaagcgctgcaaacctacgccaagaac
ctgcccggtttccacgtcctgccgatctacggcggccaaagctacaccatccagctcaag
cagttgtcgcgcggcgcccacgtcatcgtcggcaccccgggtcgcgtcatggaccacctc
gagcgcaagacgctcaacctcgacaacctgaagaccatggttctcgacgaagccgacgaa
atgctgcgcatgggcttcatcgacgacgtcgaatggattctcgaacgcaccccggctcag
caccagaccgcgttgttctcggccaccatgccggaacagattcgccgcgtcgcgcagaaa
tacctagtcgaaccgcgcgaaatcaagatcaagtctgccactgccaccgttgccgccatc
cgtcaggtttactggcaggtttccggcatgcacaagctggacgccctgacccgcatcctt
gaagttgaagaagacttcgacgccgccatcatcttcgtccgcaccaagacggccaccgtc
gaactggctgacaaactctcggccaggggttacgccgccgccgccctgaacggcgacctc
aaccagcagatgcgcgaacgcgtcatcgagcagttgaagtccggtgcgctggacatcgtc
atcgccaccgacgtcgccgcccgcggcatcgacgtgccgcgcgtcagccacgtggttaac
tacgacattccgtacgacaccgaagcctacgtgcaccgcatcggccgtaccggccgcgcc
ggccgcaccggcaacgccatcctcttcgtcgcaccgcgtgaaatccgcatgctgcgcacc
atcgaacgtgctacccgctcgccgatcgcgccgctgaccctgccgagccgggccgacgtg
accaacaagcgcgtctccgacttcaagcaaaaggtcgttgaagtgctcaacgccgaaggc
ctcgatttcttctccaacatcgtctcgcagattgccgaagagcaaaatgtcggtgctgag
gaagtcgccgctgcgctggccatgatggcccaggaaggcaagccgctgcagatcgctggt
gaagacccgcgtcccgccccggccccctccttcgacagtcgtgacagccggccgcgtccg
ggcagctttgaccgcgacgagcgcaaaccgcgcgccgaccgtggcgacaagccgagcttc
gaaagccgtggcgaacgtccgcgtcgcgaagagcgcccaacccgttcggccccgccgagc
ggcgacatggtgcgttatcgcatcgatgtgggcagggatcatggcgttcaggtcaaagac
atcgtcggcgccatcgccaacgaagccggcattgaaagccgcttcatcggccgcatcgcc
ttgtacgacgaatcgagcacggtcgaactgccggccggcatgccgggcgaagcctccaac
gccctgaaacgcacccgcgtccgcggcgtgccgatcaacctgcgtcccgatgaaggccgt
ccggatggcggcgccagcagcgaacgcaagttcgacggcgagcgcagcttcaagaaaaag
agcttcgaccgctaa
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