Ferribacterium limneticum: KI610_06465
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Entry
KI610_06465 CDS
T07599
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fle
Ferribacterium limneticum
Pathway
fle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI610_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fle03019
]
KI610_06465
Enzymes [BR:
fle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI610_06465
Messenger RNA biogenesis [BR:
fle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI610_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UCV20911
LinkDB
All DBs
Position
complement(1343397..1344869)
Genome browser
AA seq
490 aa
AA seq
DB search
MTFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPIL
QRILPFASSSPSPAKHPVRALILAPTRELAMQVYESVKTYSKHTPIRAMCAFGGVDIRPQ
IAELKKGVEILVATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLP
AQRQSLLFSATFSDEIKKLADTMLKSPILIEVARRNQVSDTITHRVHPVSEYGKRGLLTK
LLKSGEIRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGETDA
LIATDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKTGNAISLVSAREVVYLV
DIEKLIKRPIEQVEVAGFEPEAEYEYPPGNKKKRSAPVVAPVAQRPERGERPERSERSER
TSRPERNERSDRRPPRRNPMIAADGFDFSKPYEDNSPRGDVPDSATAAAKVDPHKPKRVV
AALLGGLGRK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atcacctttgccgacctcggcctggcgccagaactcctgcgcgcagtgctcgacgagggc
tacaccaagccgacgccgatccaggcccaggccatcccgctcgtcatctccggcaaggac
atcatgggcggtgcccagaccggcaccggcaagacggccgccttcacgctgcccatcctg
cagcgcatcctgccctttgccagcagcagcccatcgccagccaagcacccggtgcgcgcc
ctgatcctcgccccgacccgcgaactggccatgcaggtctacgagtcggtcaaaacctac
agcaagcacacgccgatccgcgccatgtgcgccttcggtggtgtcgacatccggccgcag
atcgccgaactcaagaaaggcgtcgaaatcctcgtcgccacccctggtcgcctgctcgat
cacgtcgaaaacaagagcgtcagcttcaattccgtccaggccctggtcctcgacgaagcc
gaccgcatgctcgacatgggctttgtccccgacgtcacgcgcatcctcaacatgctgccg
gcccagcgccagagcctgctgttctcggccaccttctcggacgaaatcaagaagctggcc
gacaccatgctcaagtcgccgatcctgatcgaggtcgcccgccgcaaccaggtttccgac
accatcacccaccgcgtccatccggtgtccgaatacggcaagcgcggcctgctgaccaag
ctcctgaagtccggcgaaattcgccagtgcatcgtcttctgtcgcaccaagcagggctgc
tcgcgcctgacccgcgaactgcagcgcgccggcatcaaggccgacgccatccacggcgac
aaaagccaactggagcgcatcaaggcgctcgaagccttcaagggcggcgaaaccgacgcc
ctgatcgccaccgacgtcgcggcgcgcggcctcgacgttgacgacctgccctacgtcatc
aactacgaactgccgcacacgccggaagactacgtgcaccgcatcggccgcaccggccgc
gctggcaagaccggcaacgccatttcgctggtcagcgcccgcgaagtcgtctatctggtc
gatatcgaaaagctcatcaagcggccgatcgaacaggttgaagtcgccggtttcgagccg
gaggcggaatacgaatatcccccgggcaacaagaaaaaacgcagcgccccggtcgtcgcc
ccggtcgcccagcgaccggaacgcggcgaacgccccgagcgcagcgaacgtagcgaacgc
accagccgtccggaacgcaacgagcgttcggatcgccgtccgccgcgccgcaacccgatg
atcgcggctgacggtttcgacttcagcaagccctacgaagacaactcgccccgcggcgat
gtgccggattccgccacggctgcagccaaggtcgatccgcacaagccgaagcgggttgtt
gcggcgttattgggtgggcttgggcgcaagtag
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