Ferribacterium limneticum: KI610_08120
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Entry
KI610_08120 CDS
T07599
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fle
Ferribacterium limneticum
Pathway
fle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI610_08120 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fle03021
]
KI610_08120 (rho)
03019 Messenger RNA biogenesis [BR:
fle03019
]
KI610_08120 (rho)
Transcription machinery [BR:
fle03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KI610_08120 (rho)
Messenger RNA biogenesis [BR:
fle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KI610_08120 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
AAA_25
AAA
AAA_22
NACHT
Mor
Motif
Other DBs
NCBI-ProteinID:
UCV20521
LinkDB
All DBs
Position
complement(1693617..1694876)
Genome browser
AA seq
419 aa
AA seq
DB search
MQLSELKTLHVSKLLDMATELAIENANRMRKMELIYAILKAKAKNGETIYGDGTLEVLSD
GFGFLRSSDTSYLANPDDIYVSPSQVRRFNLRTGDTVEGEIRTPKEGERYVALTKLESIN
GFPPEANKHKIMFENLTPLHPTRHLKLERDIKSEENITSRVIDMIAPVGCGQRGLLVAPP
KTGKTVMLQNIAHAITANHPEVILIVLLIDERPEEVTEMTRTVKGEVVASTFDEPATRHV
AVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTILATALIDTGSRMDEVIYEEFKGTGNSEIHLDRRMAEKRMYPAVNV
NRSGTRREELLLKPDVLQKMWVLRKLCYPMDDLEAMEFLLDKVKSTKGNQEFFDAMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcaactttccgaactaaaaacactacacgtcagcaaactgctggatatggctaccgaa
ctggccatcgaaaacgccaaccgcatgcgcaagatggagctgatctacgccatcctgaaa
gccaaggccaaaaacggcgaaaccatctacggtgatggcacactggaagtactgtcggac
ggcttcggattcctccgctcctccgacacctcctacctcgccaatccggacgacatttac
gtctctccatcgcaagttcgccgcttcaacctgcgcaccggtgacaccgtcgaaggcgag
atccgcacgccgaaggaaggcgaacgctacgttgcattgaccaagctggagtcgatcaac
ggcttcccgccggaagccaacaagcacaaaatcatgttcgagaacctgacgccgctgcat
ccgacgcgtcacctcaagctcgagcgcgacatcaagtccgaagaaaatatcaccagccgc
gtcatcgacatgattgcgccggtcggttgcggtcagcgcggcctgcttgtcgctccgcca
aagaccggcaagacggtgatgctgcaaaacattgcccacgccatcaccgccaaccacccg
gaagttatcctgatcgtcctgctcatcgacgagcgtccggaagaagtcactgaaatgacc
cgcaccgtcaaaggtgaggtcgttgcctcgacttttgacgaaccggctacccgccacgtc
gcggttgccgaaatggtcatcgagaaagccaagcgcctggtcgagcacaagaaggatgtc
gtcatcctgcttgattcgatcacccgcctcgcccgcgcctacaacaccgtccagccggct
tccggcaaggtgctgaccggcggcgtcgacgcaaatgccctgcagaagccgaagcgcttc
ttcggtgcggcgcgcaatattgaagaaggcggttcgctgaccatcctcgctacagccctg
atcgacaccggctcacgcatggacgaagtcatctacgaagagttcaagggtaccggcaac
tccgaaatccacctcgaccgtcgcatggccgagaagcggatgtacccggcggtcaacgtc
aatcgttcgggtacccgtcgcgaagaacttctgctcaagccggacgtcctgcaaaaaatg
tgggttctgcgcaaactctgctacccgatggacgatctcgaagcgatggaattcctgctc
gacaaggtcaagtccaccaagggcaaccaggagttctttgacgccatgcgtcgcggctaa
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