Ferribacterium limneticum: KI610_10565
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Entry
KI610_10565 CDS
T07599
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fle
Ferribacterium limneticum
Pathway
fle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI610_10565 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fle03019
]
KI610_10565 (pnp)
03016 Transfer RNA biogenesis [BR:
fle03016
]
KI610_10565 (pnp)
Enzymes [BR:
fle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KI610_10565 (pnp)
Messenger RNA biogenesis [BR:
fle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KI610_10565 (pnp)
Transfer RNA biogenesis [BR:
fle03016
]
Prokaryotic type
tRNA degradation factors
KI610_10565 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
KH-I_KHDC4-BBP
S1_2
Par3_HAL_N_term
DUF4342
Motif
Other DBs
NCBI-ProteinID:
UCV17291
LinkDB
All DBs
Position
2203862..2206003
Genome browser
AA seq
713 aa
AA seq
DB search
MFNVVKKTFAYGAHQVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKSAKPGQDFFPLT
VDYQEKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVIATVMSL
NPEVDSDIPALIGASAALAISGVPFNGPIGAARVGYIDGQYVLCPTLSQLKGSQLDLVVA
GTEAAVLMVESEADQLSEEIMLGAVVFGHTEMQKAINAINELVEEAGKPEWEWQAAPKDE
ALVASLFALVSAKLEEAYSITVKQTRSQAVKVIRAEAIAALCQGEGAPDENTVGNLFHEI
EASIVRGRILSGAPRIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTNR
DEQIIDALAGEYRDRFMLHYNMPPYATGECGRVGTPKRREIGHGRLAKRALLAVLPKPED
FSYSMRLVSEITESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKDGNRFAVLTD
ILGDEDHLGDMDFKVAGSTSGITALQMDIKIQGITKEIMQVALAQAKDARIHILNLMQEA
AAGPREEMSAYAPRLYTFKINPEKIRDVIGKGGAVIRALTEETGTTIDIQDDGTITIASS
SGEAAAAARARIDAITAEVEIGKIYEGTVLKILDFGAIVSVLPGKDGLLHISQIAQERVN
KVEDYVKEGQIVRVKVLETDDRGRVKLSMKAAASEEGTAAAQPIANEAAQEQQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgtcgtgaaaaaaacattcgcctatggtgcccatcaagtcaccatcgaaacc
ggtgaagttgcccgccaggctggcggtgccgtcctcgtttccatggaagaaaccgtggtt
ctggtcaccgttgtggctgccaagagtgccaagccgggccaggatttcttcccgctgacc
gttgattaccaggaaaagacctacgctgccggccgtattcccggtggcttcttcaagcgc
gaaggccgtccttccgaaaaggaaacgctgacctgccgcctgatcgatcgtccgatccgc
ccgctgttcccggaaggcttctacaacgaagtccaggtcatcgctacagtgatgtcgctg
aacccggaagttgattccgatatcccggccctgatcggcgcttccgccgccctggctatt
tccggcgtgccgttcaacggcccgatcggcgctgcccgcgttggttacatcgacggccag
tacgtcctatgcccgaccttgagccagctcaagggcagccagctcgacctcgtcgtcgcc
ggtaccgaagctgccgtgctgatggttgagtcggaagccgaccagctgtccgaagaaatc
atgctcggcgccgttgttttcggtcacaccgaaatgcagaaggcgatcaacgccatcaac
gaactcgtcgaagaagccggcaagccggaatgggaatggcaagctgccccgaaggacgaa
gcactggttgccagcctgttcgcgctggtcagcgccaagctcgaagaagcctacagcatc
accgtcaagcaaacgcgtagccaggccgtcaaggtcatccgtgctgaagccattgccgcc
ctgtgccagggcgagggcgcgcctgacgaaaataccgtcggcaacctgttccacgaaatt
gaagcttccatcgttcgcggccgcatcctgagcggtgccccgcgcattgacggtcgcgac
acgcgcaccgtgcgtccgatcaccatgcgttccggcgtcctgccgcggacccacggctcg
gccctgttcacccgtggcgaaacccaggcgctggctgttgccacgctcggtaccaaccgc
gacgagcagatcatcgacgcgctggctggtgagtaccgtgaccgcttcatgctgcattac
aacatgcccccgtacgccaccggcgaatgcggtcgtgtcggtacgccgaagcgtcgcgaa
atcggtcacggccgtctggccaagcgcgcgctgctcgccgtgctgccgaagccggaagac
ttctcctactcgatgcgtctggtttcggaaatcaccgaatccaacggttcgtcctcgatg
gcctctgtttgcggtggctgtctagccctgctggacgccggcgtaccgctcaaggcgcac
gttgccggtatcgccatgggtctgatcaaggacggcaaccgtttcgccgtgctgaccgat
atcctgggcgacgaggatcaccttggcgacatggacttcaaggtcgctggttcgaccagc
ggtatcaccgcgctgcagatggacatcaagatccagggcattaccaaggaaatcatgcag
gttgccctggcccaggccaaggatgctcgcatccatatcctgaatctgatgcaggaagct
gctgctggcccgcgtgaagaaatgtcggcctacgcaccgcgtctgtacaccttcaaaatc
aatccggaaaagatccgtgacgtcattggcaagggcggcgctgttatccgcgccctgacc
gaagaaaccggcaccacgatcgatatccaggatgatggcaccatcaccatcgcttccagt
agtggtgaagctgccgccgctgcccgtgcccgtatcgatgcgatcacggcagaagtcgaa
atcggcaagatctacgaaggtaccgtgctcaagattcttgatttcggtgcaatcgtttcc
gtcctgccgggcaaggatggtctgctgcacatctcccagatcgctcaggaacgtgtcaac
aaggtcgaagactacgtcaaggaaggccagatcgttcgcgtcaaggttctcgaaaccgac
gaccgcggtcgcgtcaagctgtcgatgaaggctgctgcttctgaagaaggcactgcggct
gcccagccgattgccaacgaagcagctcaagagcagcaataa
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