Ferribacterium limneticum: KI610_11515
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Entry
KI610_11515 CDS
T07599
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fle
Ferribacterium limneticum
Pathway
fle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI610_11515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fle03019
]
KI610_11515
03009 Ribosome biogenesis [BR:
fle03009
]
KI610_11515
Enzymes [BR:
fle01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KI610_11515
Messenger RNA biogenesis [BR:
fle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KI610_11515
Ribosome biogenesis [BR:
fle03009
]
Prokaryotic type
rRNA processing factors
KI610_11515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UCV17460
LinkDB
All DBs
Position
complement(2400181..2402853)
Genome browser
AA seq
890 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDY
GADRHGFLPFKEVSRAFFLPGAEAGRARIQDALKEGQELIVQVDKDERGNKGAALTTYVS
LAGRYLVLMPNNPRGGGVSRRVDGDERAELRDVMDQLEVPNGMSLIARTAAIGRQAEELQ
WDLNYLLQLWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQAR
AFMGTVMPGNVNRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAV
DVNSGRSTKGADIEETALKTNQEAADELARQLRLRDLGGLIVIDFIDMESQKNQRDVENR
LRDGLRFDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSTESAALH
ILRILEEESMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNIHLETPA
HTITRLRHDDLNQDDIREPSYRMVDMPLEEAIKQATQQEIVKPRQEAAIKGISPDQPAPN
LPEKTEAPVAAPVQPEAGIFSKLFSWFRTPAKPVETVVAPEPAKKPREGRGDGRRDRDGR
RGGRNANKREEERGERGERNKDRGNRNERGAEKAPSDESTAGNTERQERRPRGERKGRGE
RPQAEAAENKLAQQASGADLSVSVTPLTGNEAQEANGSEEQGNRRRGRRGGRGRGERRPE
AETVIPVIETGEIVAPAQETAEPVSQEPVIVVIPAAEPAIAQATAQMIEPIPVVSEPEIA
SPDSVIELDQAAPEPSSAQAAAIETAVVETIAVSAPPIAETVAQPVAVASEPIDLTSALA
ESGLVLVQTTAPAAAVVPAEPPVKLGRPRKQKSIAEQAENEPLVMVETGK
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctattcaatgcgacacaggcggaagaactccgtgtcgccattgtcgat
ggtcagaaactgattgatctcgacattgaatccgccgccaaggaacaacgtaaaagcaac
atctacaagggtgtaattacccgcatcgaaccgtcgctcgaggcctgcttcgtcgactac
ggtgccgaccgccacggatttctcccctttaaggaagtctcccgcgccttctttctgcca
ggcgcagaagccggccgagccagaattcaggatgcgctgaaggaaggccaggagctgatc
gtccaggtcgacaaggacgaacgtggcaacaagggcgctgccctgaccacctacgtttct
ctggccggccgctacttagtactgatgccgaacaatccgcgcggcggtggcgtttcccgt
cgcgttgacggcgacgagcgcgctgaactgcgtgacgtcatggatcagctcgaagtgccc
aacggcatgagcctgattgcccgtaccgcagctattggccgtcaagccgaagaactgcaa
tgggacttgaactacctgctgcaactgtggaccgccatcgacggtgccgcccagcagcag
agcggcgctttcctgatttatctggaaggcagcctggtcattcgtgccatccgcgattac
ttccagccggatatcggtgagatcctcatcgataccgacgaggtttacgagcaagcccgc
gccttcatgggcacggtcatgccgggcaacgtcaatcgcgtcaaacgctaccgcgacgac
gtaccgctgttctcgcgctttcagatcgaacaccagatcgagaccgccttcgcccgtcag
gtcaatctgccatccggtggcgccatcgtcattgaccacacagaagcactggtcgctgtc
gacgtaaactccggtcgctcgaccaaaggagccgatatcgaagaaaccgcgctcaagacc
aaccaggaagcggccgacgaattagcccgccaactgcgcttgcgcgaccttggcggcttg
atcgtcatcgacttcatcgatatggaaagccagaagaaccagcgcgacgtcgaaaaccgc
ctgcgcgacggccttcgttttgaccgtgcccgcgttcagatgggcaagatcagccgattc
ggcctgatggaactgtcccgtcagcgcctgcgccctgcattggccgaaaccagctacatc
ccctgcccgcgctgcaccggcaccggacacatccgctcgaccgaatccgctgcgctgcat
atcctgcgcattctggaagaggagtcgatgaaggaaaacaccggcgccgttcatgttcaa
gttccggtcgatgtcgccaccttcctgctcaatgaaaagcgtccggacatccaggccatc
gagttgcgccacaaggtcaccatcctgctcatcccgaacatccatctcgaaacgccggcc
cataccatcacccgcctgcgccacgacgacctgaatcaggatgacatccgcgagccgtcc
taccgcatggttgatatgcctcttgaggaagccatcaaacaggcaactcagcaagagata
gtcaaaccccgtcaggaggcggcaatcaagggaatttcgcccgaccagcccgcgcctaac
ctcccggagaagacagaggcaccggttgcagcaccagtccagccggaagccggtattttc
tccaagcttttttcgtggttccgtactccggcaaagccggtcgaaacggttgttgcgcct
gaaccggcgaagaaaccccgcgaaggtcgcggtgatggtcgtcgagaccgcgacggtcgt
cgtggcggccgtaacgctaacaagcgcgaagaggaacgtggggaacgcggcgaacgtaac
aaggatcgcggcaaccgcaatgaacgcggcgcagaaaaggcaccttcagacgagtcgacc
gcaggcaacaccgaacgtcaggaacgccgtccgcgtggtgagcgcaaggggcgtggtgaa
cgtccgcaagcagaggcggctgaaaacaagctggcgcaacaggcatcaggtgcggatttg
tccgtatcagtcaccccgctgaccggcaatgaagcgcaagaagccaacggcagtgaagaa
cagggcaatcgtcgtcgtggccgtcgtggcggacgcggtcgtggtgagcgtcgccccgaa
gcggagacagtcataccagtcatcgaaactggcgagatagtcgccccggctcaggaaacc
gcagaacctgtcagccaggagccggtgatcgttgttatcccggcagccgaaccagctatt
gcccaagccactgcacagatgattgagccgatcccggtagttagtgagccagaaatcgcc
tctcctgactctgttatcgaacttgaccaagctgcaccggaaccctcatcggcccaagct
gcagcaatcgaaactgcggtggtcgagactattgcagtcagcgccccgccaatcgccgaa
accgtagcccagccggtcgctgttgcttctgaaccgatcgacttaacctcggctttggct
gaaagcggattggttctggttcagacaacagcacccgctgcagctgttgtccctgctgag
cctccggtcaagctaggacgtccgcgcaagcagaagtccattgccgagcaagccgaaaac
gaaccgctggtgatggttgaaactggcaaataa
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