Ferribacterium limneticum: KI610_12360
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Entry
KI610_12360 CDS
T07599
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fle
Ferribacterium limneticum
Pathway
fle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI610_12360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fle03019
]
KI610_12360
Enzymes [BR:
fle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI610_12360
Messenger RNA biogenesis [BR:
fle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI610_12360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_25
Cas3-like_C_2
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UCV17619
LinkDB
All DBs
Position
2573456..2574808
Genome browser
AA seq
450 aa
AA seq
DB search
MTFSALGLAETLLQSLETLGYKTPTPIQEQAIPAILEGRDVMAAAQTGTGKTAGFALPIL
HSLATDDIKVGSNSVRALVLVPTRELAEQVHASFRQYGEHSGVSTYAAYGGVSINPQMMR
LRRGVDVLVATPGRLLDLYSQNALKLNKVQVLVLDEADRMLDLGFSNELDAVFAALPKKR
QTLLFSATFSEVIRSLAKARLRNPLTIEISPPNSTVKAVKQWMVPVDKKRKTELFLFMRK
DRKWGQVLVFVKTKRGADELVSILHAKRIKADAIHGDKPQPARLRALESFKAGEVQILVA
TDVAARGLDIDDLPQVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEAPMLAAIE
ILLKQTLSREEEPGFEPDHRIPLTGAAAIAAKKIKKPKVAGGRGGKGTPSNWVGFDDAPK
RPGARPAARPGGMPRSTGKNGQKQNRSGGR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgaccttctccgccctcggccttgccgaaacgctgctccagtccctcgaaacgctcggc
tacaagacgccgacgccgattcaggagcaagccattcccgccatccttgaagggcgcgac
gtgatggccgcagcccagaccggcaccggcaagaccgccggcttcgcgctgcccatcctg
cacagcctggccaccgatgatatcaaggtcggcagcaattccgtgcgcgccctcgtcctc
gtgccgacgcgcgaactggccgaacaggtccacgccagcttccgccagtacggcgaacac
agcggcgtcagcacctacgcggcctacggcggcgtcagcatcaacccgcagatgatgcgc
ctgcgccgtggcgtcgatgtcctcgtcgccacccccggccgcctgctcgatctgtatagc
cagaacgccctcaaactcaacaaggtgcaggtgctcgtcctcgacgaagccgaccgcatg
ctcgacctcggcttctcgaacgaactcgacgccgtctttgccgccctgcccaaaaagcgg
caaaccctgctcttctcggccaccttctccgaagtcatccgcagcctggccaaagcccgc
ctgcgcaacccgctgaccatcgaaatcagcccgcccaacagcaccgtcaaggccgtcaaa
cagtggatggtgcccgtcgacaagaagcgcaagaccgaactcttcctgttcatgcgcaag
gaccggaaatggggccaggtgcttgttttcgtcaagaccaagcgcggcgccgacgaactg
gttagcatcctgcacgccaagcgcatcaaggccgatgccatccacggcgacaaaccgcaa
ccggcccgcctgcgtgcgctggaaagcttcaaggccggcgaagtgcaaatcctcgtcgcc
accgacgtcgccgcccgcgggctggacatcgacgacctgccgcaagtcgtcaatttcgac
ctgcccatcgtcgccgaagactacatccaccgcatcggccgcaccggccgcgccggcgcc
accggcgaagccatctcgctggtctgcgccgacgaagccccgatgctcgctgccatcgaa
atactgctcaaacaaacgctaagccgcgaagaagaaccgggcttcgaacccgaccaccgc
attccgctgaccggcgccgctgcaatcgccgccaagaagatcaaaaaaccaaaggtagcc
ggcggccgaggcggcaaaggcacaccgagcaactgggtcggcttcgacgacgcccccaaa
cgtcccggcgccaggccggcagcccgcccgggtggaatgccacggtcaaccggaaaaaac
ggccaaaaacaaaatcggtcgggcgggcgctga
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integrated database retrieval system
