Ferribacterium limneticum: KI610_16915
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Entry
KI610_16915 CDS
T07599
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fle
Ferribacterium limneticum
Pathway
fle03030
DNA replication
fle03430
Mismatch repair
fle03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI610_16915 (dnaE)
03430 Mismatch repair
KI610_16915 (dnaE)
03440 Homologous recombination
KI610_16915 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fle03032
]
KI610_16915 (dnaE)
03400 DNA repair and recombination proteins [BR:
fle03400
]
KI610_16915 (dnaE)
Enzymes [BR:
fle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KI610_16915 (dnaE)
DNA replication proteins [BR:
fle03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KI610_16915 (dnaE)
DNA repair and recombination proteins [BR:
fle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KI610_16915 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
PHP_C
Motif
Other DBs
NCBI-ProteinID:
UCV18458
LinkDB
All DBs
Position
complement(3545654..3549133)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSPMNSPRYVHLRLHSEYSVTDGIVRIGDAVKRAAGDGMPAMALTDLGNLFGLVKFYSGA
RGKGVKPIAGADVWIANPESPDDAYRLLLLARNNAGYKQLCQLLSKAYLVEGRRDRAELN
RDWFNEVGCDGLIALSGAHLGDVGEALLNGNFDLAGERAKAWEAIFPGAFYLEVQRYGQA
QQEAIVQQTADLAGETGIPLVATHPIQFLNRDDFRAHEARVCIAEGYVLGDTRRPKLYTE
EQYFKTQADMVQLFADLPEALENTLEIARRCNITMTLGKNFLPDFPIPPGMTIGEYLVDE
AEKGLEVRLAELYPDPEVRAQRRPEYDERLVFECKTILQMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYSLRITDLDPLAYALLFERFLNPERVSMPDFDIDFCQDNRWRVI
EYVRQHYGEDAVSQIATFGTMSSKAVIRDVGRVFGLPYSMCDRISKLIPIVQNKPVSLAE
ALEQEPQLKEMMQGDGDGETVRELFDLASRLEDLTRNVGMHAGGVLIAPGKITDFCPIYQ
ATGSDASTVSQFDKDDVEKVGLVKFDFLGLRNLTIIELAVEYIRRMTGEKLDLMSLGFTD
PAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFIL
RKKGQQKIDYFHPDLTACLSPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKAE
EMALHRETIAAGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYHTAWLKAHH
CAAFMAATMSSDLDNTDSVKIFYEDTIANKIKVLGPDVNVSNYRFEPVDRGTIRYGLGAV
KGTGEQAVNVILKARETGGPFKDLFDFCQRCDKRMVNRRTTEALIKAGAFDAIAPLVAPG
KGADRCKLLATVGIAMDFAEQLERNAMQTSLFDVGDVADEHAPEYVNVRPWDEKTQLMEE
KTALGFFFSGHPYNTCKKELSRFVRRPLNRLEPSKELTTLAGVVVGVRTQMTRRGKMLFV
QLDDGTGMIEVTVFNELFEAERAKIVTDEVLIIEGKVRYDDFSGGNSVTADKLMTLGEAR
ARFARHLLLKMNGNSDAHKLKSLLTPFSPGTAAVRVRYRNADAECELQLGNALRVRLDDA
LLEALSGWLQPENVEIIYS
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaattcgccgcgctacgtccacctccgcctccattctgaatactccgtt
accgatggcatcgtgcgcatcggtgatgccgtcaagcgcgcggcgggagatggcatgccg
gccatggcgctgaccgatctgggcaatctgttcgggctggtcaagttctattccggggcg
cgcggcaagggggtcaagccgattgccggggcggatgtctggatcgccaatccggagtcg
ccggacgatgcttatcgcctgctgctgctggcccgcaacaacgcgggttacaagcagttg
tgccagttgctgagcaaggcttatctggttgaaggccggcgtgaccgggctgaactcaat
cgcgactggttcaacgaagttggctgcgacgggctgatcgccttgtccggggcgcatctc
ggtgatgtcggtgaagcgctgttgaacggcaatttcgatctggctggcgagcgggccaag
gcctgggaggcgattttccctggcgccttttatctcgaagtgcagcgctacggccaggcg
cagcaggaggccattgtccagcagacggccgatctggctggcgagacgggcattccgctg
gtcgccacgcatcccatccagttcctgaatcgcgacgacttccgcgcccatgaagcgcgc
gtctgcatcgccgaaggttacgtgctgggcgatacgcggcgcccgaagctgtacacggaa
gagcagtatttcaagacgcaggccgacatggtccagttgttcgccgatctgccggaggcg
ctggaaaacacgctggaaatcgcccggcgctgcaacatcacgatgacgctgggcaagaac
ttcctgcctgatttcccgattccgccgggcatgaccatcggcgaatatctggtcgatgag
gcggagaaagggttggaagtccgcctcgccgagctgtatccggacccggaagtgcgcgcc
cagcgccggccggagtacgacgagcgcctcgtcttcgagtgcaagaccattctccagatg
ggcttcccaggctacttcctgatcgtggccgacttcatcaactgggccaagaacaacggc
gtgcccgtcgggccgggccggggttccggcgccgggtcgctggtcgcctacagcctgcgc
attaccgacctcgatccgctggcctacgccctgctgttcgagcgcttcctgaatccggaa
cgggtgtcgatgcccgacttcgatatcgacttctgccaggacaaccgctggcgggtcatc
gagtacgtgcgccagcactacggtgaggacgcggtcagtcagatcgccaccttcggcacc
atgtcgtcgaaggcggtgatccgcgacgtcggccgcgtcttcggcctgccgtactcaatg
tgcgaccggatttccaagctcattccgattgtccagaacaagccggtgtcactggccgag
gcgctggagcaggagccgcagctcaaggaaatgatgcagggcgacggcgatggcgaaacc
gtccgcgaactgttcgatctggccagccggcttgaagacttgacgcgtaatgtcggcatg
catgccggcggcgtgctcatcgcgccgggcaagatcaccgatttctgcccgatttatcag
gcgaccggcagcgatgcttcgacggtgtcgcaattcgacaaggatgacgtcgagaaggtc
ggcctggtcaagttcgactttctgggcctgcgcaacttgacgattatcgagctggccgtc
gagtacatccgccggatgaccggcgagaagctcgatttgatgagcctcgggttcaccgat
ccggccgcctaccagattctcaaggacgccaacacgacggcgatcttccaggttgaatcg
gagggcatgaagaagctgctcaagaagctggcgcccgaccgtttcgaagacatcatcgct
gtgctcgcgctctatcgtcccggcccgctcggttccgggatggtcgatgacttcatcctg
cgcaaaaagggccagcagaagattgattattttcaccccgacctgaccgcctgtctgtcg
ccgacttacggcgtcatcgtgtatcaggaacaggtcatgcagatctcgcagatcatcggc
ggctacacgctcggtggcgccgacatgctgcgccgcgccatgggcaagaagaaagccgag
gaaatggccctgcaccgcgaaaccatcgcggccggtgccaagcagaagggttacgacccg
gcgctggccgagcagttgttcgacctgatgaccaagttcgccgagtacggcttcaacaag
tcgcacaccgccgcctacgccgtcgtcacctaccacaccgcctggctcaaggcgcaccac
tgcgcggccttcatggcggcgacgatgtcgtccgatctcgacaacaccgactcggtgaag
atcttttacgaagacaccatcgccaacaagatcaaggtgctcgggccggacgtcaatgtc
tcgaattaccgtttcgagccggtcgaccgcggcaccatccgttacggtctgggggcggtc
aaggggaccggcgagcaggcggtgaacgtcatcctcaaggcgcgcgaaaccggcgggccg
ttcaaggacctgttcgatttctgccagcgctgcgacaagcgcatggtcaatcgccggacc
accgaggcgctgatcaaggccggtgcatttgacgcgattgcgccgctggtcgcgccgggc
aagggtgccgatcgctgcaagctgctggccaccgtcggcatcgccatggattttgccgag
cagctggaacgcaacgccatgcagaccagcctgtttgacgtcggtgacgtggcggacgaa
catgcgccggaatacgtaaacgttcgcccgtgggacgaaaagacgcagttgatggaagaa
aagacggcgctcggtttcttcttctccggccatccgtacaatacctgcaagaaagaactg
tcgcgtttcgttcgcaggccactcaaccggctggaaccctcgaaggagttgacgacgctg
gccggcgtcgtggtcggtgtgcgcacccagatgacccggcgcggcaaaatgctgtttgtg
caactcgacgacggcaccgggatgatcgaggtcaccgttttcaacgaacttttcgaagcc
gaacgcgccaagatcgtcaccgacgaagtgctgatcatcgaaggcaaggtgcgctacgac
gacttttccggcggcaacagcgtgaccgccgacaagctcatgacgctcggcgaggcgcgg
gcccgtttcgcccggcatctgctgctcaaaatgaacggcaattccgatgcgcacaagttg
aagtcattgctgacgcctttctcgcccggcaccgctgccgtgcgcgtccgctaccgcaat
gccgacgccgagtgtgaactgcaactcggcaacgccctgcgcgtccgcctcgacgacgct
ctgctcgaagccttgtcgggctggctacaaccggaaaacgtcgaaataatctattcgtga
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