Flavobacterium sp. GSB-24: FLGSB24_05390
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Entry
FLGSB24_05390 CDS
T10693
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
flf Flavobacterium sp. GSB-24
Pathway
flf02020
Two-component system
flf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
flf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FLGSB24_05390 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FLGSB24_05390 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flf03021
]
FLGSB24_05390 (rpoN)
Transcription machinery [BR:
flf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FLGSB24_05390 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
Motif
Other DBs
NCBI-ProteinID:
BDU23795
LinkDB
All DBs
Position
572751..574148
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AA seq
465 aa
AA seq
DB search
MKLIQLPTQAFEQRLLEEMNENPALEAGKEDEYEADEFANEDYDDYDDAESDRIEADDIN
IDEYLSDDDTPDYKTQVNNYSDDEERETPFASPISFHQDLINQLNTFILNDEEREIAEFL
VGSIDDMGYIRRSVPDIVDDMAFTQGIYTDEAMVEKMMTVIHELEPSGVGARDLQECLLL
QLKHKTPTEYVDLAIDIIENQFDAFTKKHYDKLLQKYSVSNEQLKKAIHEIERLNPKPGG
SYTGNNKVTENVVPDFAIRIVDGELELTLNGRNAPSLHVSKDYQEMMQTYKDSRDKSSAQ
KDAVQFIKQKLDSAKWFIDAIRQRQETLFVTMNAIMHYQEEYFLDGDETKLKPMILKDIA
DMVGLDISTISRVANSKYVETPYGTKLIKEFFSEAMKNDQGEDVSTLEIKKILKNTIEEE
DKKKPLPDDQLAEILKEKGYPIARRTIAKYREQLDIPVARMRKKI
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaagttaattcaattgcctacgcaagcttttgagcaacgtttattagaagaaatgaac
gaaaatccggctctggaagctggaaaagaagatgaatacgaagcagatgaattcgcaaat
gaagactacgacgattatgatgatgcagaatctgacagaatcgaagcagacgacattaat
atcgatgaatatttaagcgacgacgatacacctgattacaaaactcaggtgaataattac
agtgacgacgaagaacgtgaaactccatttgcttctccaattagttttcatcaggattta
atcaatcagttaaatacttttattttaaatgatgaagaacgcgaaatcgccgaattcctt
gtgggaagtattgatgatatgggttacatccgcagaagcgttccagatattgtagacgac
atggcttttactcagggaatttatactgatgaagcaatggtcgaaaaaatgatgaccgtg
attcacgaattagaaccttctggagttggtgcacgagatttacaggaatgtttactgctt
cagttaaaacacaaaacaccaactgaatatgttgatctagcgatcgatattatcgaaaat
cagtttgatgcttttacgaaaaaacattacgataaactactacagaaatacagcgtttct
aacgaacagcttaaaaaagcaattcacgaaattgaaagactaaaccctaaaccgggcgga
tcttatactggaaacaataaagtaactgaaaatgtggttcctgatttcgcaatcagaatt
gttgatggcgaacttgaattgactttaaacgggagaaatgctccttccctgcatgtttct
aaggattatcaggaaatgatgcagacgtataaagattctcgtgataaatcatcggctcaa
aaagatgctgttcaatttatcaaacaaaaactagattctgcaaaatggtttatcgatgcg
attagacagcgtcaggaaacactatttgtaacgatgaatgcaattatgcattatcaggaa
gaatatttcttagatggtgacgaaaccaaactaaaaccaatgatcttgaaagatattgcg
gatatggttggtttggatatttcgacaatttcgcgcgtagcgaacagcaagtatgttgaa
acaccatacggaacaaaactaatcaaagaatttttctctgaagcgatgaaaaatgatcaa
ggtgaagatgtttcgactttggaaatcaaaaaaattctgaagaatacaatcgaagaagaa
gacaaaaagaaaccgcttccagacgatcaattggctgaaatcttaaaagaaaaaggatat
ccaattgcaagaagaacgattgcaaaatatcgtgagcagcttgatattccagttgcaaga
atgagaaagaagatttag
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