Flavobacterium sp. GSB-24: FLGSB24_17740
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Entry
FLGSB24_17740 CDS
T10693
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
flf Flavobacterium sp. GSB-24
Pathway
flf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
flf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FLGSB24_17740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flf03021
]
FLGSB24_17740 (rpoC)
03400 DNA repair and recombination proteins [BR:
flf03400
]
FLGSB24_17740 (rpoC)
Enzymes [BR:
flf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FLGSB24_17740 (rpoC)
Transcription machinery [BR:
flf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FLGSB24_17740 (rpoC)
DNA repair and recombination proteins [BR:
flf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FLGSB24_17740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BDU25030
LinkDB
All DBs
Position
2026235..2030542
Genome browser
AA seq
1435 aa
AA seq
DB search
MMNNRNNKDKNPVKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCERI
FGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLP
NKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNADGESLQRLDFLTEEEYLNILDTLPQE
NQYLDDLDPNKFVAKMGAECIMDLLARIDLDALSYELRHSANNETSKQRKTEALKRLQVV
ESFRESNENRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLK
RLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQ
NLLGKRVDYSARSVIVVGPELKLYECGLPKDMASELYKPFVIRKLIERGIVKTVKSAKKI
IDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNAD
FDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERIST
EDHKILGQDLTFYSAEEVNIALNEGRLELNARVKIRAKDFNEAGELVYQIIQTTAGRVLF
NEVVPEAAGYINDVLTKKNLRDIIGHILSVTDVPTTAAFLDNMKDMGYKFAFRGGLSFSL
GDIRIPEQKTKLIADAREQVEGISTNYNMGLITNNERYNQVIDVWTSANAQLTELAMKNI
REDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEG
LSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVAALK
KNEEIVESLGERILGRVALQDVINPLTNEVMVKSGEQITESIMRTIEASPIEKVEVRSPL
TCEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISE
ESSIITRFNGRLEIEDLKTVKGEDGEGNSVDIVVSRSTELKLVDEKTGIVLNTHNIPYGS
SIFVNDGDTVAKGTVICKWDPYNGVIVSEFTGKIAYEDLEQGQSFMVEIDEQTGFQEKVI
SEARNKKLIPTLLVYGKEGELIRSYNLPVGAHLMVENGEKIKAGKVLVKIPRRSSKAGDI
TGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEIKKYLVKLSSQ
ILVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFEV
VIRQMMRKVRVQDPGDTLFLEDQLIHTKDFIVQNDKLYGMKVVEDAGDSSVLKPGQIITP
RELRDENSLLKRNDRNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLNE
AAVAGKVDDLEGLKENVIVGHRIPAGTGMREYDNTIVGSKDDYNEMMANKEEYIY
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaacaataaagataaaaatccagttaaaagatttaataaaatctca
attggattggcttcaccagaatctatcttgaaagaatcaagaggagaggttttaaagcca
gaaactatcaactatagaacgcacaagcctgagcgtgacggacttttctgcgaaagaatc
ttcggacctgttaaggattttgagtgtgcttgtggtaaatataaaagaattcgttacaaa
ggtatcatctgtgaccgttgtggtgttgaagttactgagaaaaaagtacgtcgtgataga
gtaggacacatcaaccttgttgtgccaattgctcacatttggtatttccgttctcttcca
aataaaattggttatatccttggtcttccatctaagaaattagacatgatcatttactac
gaaagatacgtagtaatccaagctggtattgctaaaaatgcagatggagaatctttacaa
agattagatttcttaactgaagaggaatatttaaatattttagatactcttccacaagaa
aaccaatatttagatgatttagatccaaacaaatttgttgccaaaatgggagcagagtgt
atcatggatttattagctcgtattgacttagatgctttatcttatgaattaagacacagc
gctaacaacgaaacatctaaacaacgtaaaactgaagctttaaaaagattacaagttgtt
gagtctttccgtgagtctaacgaaaaccgcgagaaccgtccagaatggatgattatgaaa
gtggttccagttatcccgccagaattacgtccacttgtgccacttgatggaggtcgtttt
gcaacttcagatttgaacgatttatatcgtcgtgtaatcatccgtaacaaccgtttgaaa
agattaatggagattaaagctccagaagttatcttaagaaacgagaaacgtatgttgcaa
gaatctgtagattcattattcgataacacacgtaaagcttctgctgttaaaacagaatct
aatagaccattaaaatcattatctgactctttaaaaggtaagcaaggacgtttccgtcaa
aaccttttaggaaaacgtgtggattattctgctcgttcggtaattgttgttggtccagag
ttaaaattatatgagtgcggattgccaaaagatatggcatctgaattatacaagcctttc
gttatccgtaaattgatcgaaagaggtattgtaaaaacagtaaaatctgcaaagaaaatc
attgacaaaaaagagcctgtagtttgggatatccttgaaaatgtaattaaaggacaccca
gtattacttaaccgtgctcctactttgcacagacttggtattcaagcttttcagccaaaa
ttaattgaaggaaaagcgatccaattacacccattagtatgtacggctttcaacgccgat
ttcgatggtgaccagatggcggttcacttaccgttaggaccagaggctattttagaggct
caattattaatgttggcttctcataatatcttgaaccctgcaaatggtgcgcctattact
gtaccttctcaggacatggtcttgggtctatattatatgaccaaagagcgtatttctaca
gaagatcacaaaattttaggtcaagatttgactttctattctgctgaagaagtaaacatt
gcattaaacgaaggaagattagaattaaatgctcgtgtgaaaattagagcaaaagatttt
aatgaagctggagaattagtgtaccaaattattcaaacaactgcaggacgtgtattattt
aacgaagtagtacctgaagcagctggatatatcaatgacgtattgactaagaaaaacctt
agagatattatcggacacattttaagtgtgactgatgtacctactacagcagctttcttg
gataatatgaaagatatggggtataaatttgcatttagaggaggtttatcattctcttta
ggtgatattagaatcccagaacaaaaaactaagttaattgcagatgctagagagcaagtt
gaaggtatctcaactaactataacatgggtcttatcacaaataacgagcgttacaaccaa
gttattgacgtatggacttcagcaaatgcgcagttaacagaattagcaatgaaaaatatt
agagaagaccagcaaggtttcaactctgtatatatgatgcttgactctggagcgaggggt
tctaaggaacagattcgtcagttaactggtatgcgtggtttgatggctaagcctaaaaaa
tctactgctggtggtggtgagattattgaaaacccgattctttctaactttaaggaaggc
ctttcgattcttgagtactttatttctactcacggtgctcgtaaaggtcttgcggatacg
gctcttaaaacggccgatgctggttatttaacaagaaggcttcatgacgtttctcaagat
gttattgttaacatcgaagattgtggaactcttagaggtgttgaagttgctgcattgaag
aaaaatgaggaaatcgttgaatctttaggtgagagaatcttaggacgtgttgcattgcaa
gatgttattaatcctcttactaatgaagtaatggttaaatctggagagcaaattacggaa
tcaattatgagaactatcgaagcttctccaattgaaaaagtagaagttagatctccatta
acttgtgaagctttaaaaggaatttgtgctaaatgttacggtagaaacttagctactggt
aagatgacacaaagaggtgaagctgtcggagttattgcagctcagtctattggagagcca
ggtacacagttaacacttcgtacgttccacgttggaggggttgctggaggtatttctgaa
gaatctagtattattacaagatttaacggtagacttgaaattgaagatttaaaaacagtt
aaaggagaagacggagaaggaaactctgttgatatcgtagtttcacgttcaactgaatta
aaattagttgatgagaaaactggaatagttttaaatacacataacattccttacggttct
agtatttttgtaaatgatggtgatactgtcgcaaaaggaactgtaatctgtaagtgggat
ccatataacggtgtaattgtttctgaatttactggtaagattgcttacgaagatttagaa
caaggtcaatcgttcatggttgagatcgatgagcagactggtttccaagaaaaagtaatt
tctgaggctagaaacaaaaaattaatcccaactttattggtttacggtaaagaaggagaa
ttgattcgttcttacaacttaccagtaggtgcacacttaatggttgaaaatggtgagaaa
attaaagcaggtaaggtattagtaaaaatccctcgtcgttcttctaaagcaggcgatatc
acaggaggtttaccaagaattactgagttgcttgaggctcgtaacccttcaaacccagca
gttgtgtctgaaattgatggtgttgtatctttcggaaaaattaaaagaggtaaccgtgag
atcgttattgagtctaaatttggtgaaattaaaaagtatttagttaaactttctagccaa
atcttagtacaagaaaatgacttcgtaagagcgggagttccattgtctgatggtgcaatt
acaccagatgacatcttaagaattcaaggtccagctgctgttcaacagtacttggtaaat
gaaattcaagaggtataccgtttacaaggggtaaaaattaatgacaagcactttgaggta
gttattcgtcaaatgatgcgtaaagtaagagttcaggatccaggtgatactttattctta
gaggatcaattaattcatactaaagatttcatcgttcaaaacgataaattatatggtatg
aaagtagttgaagatgctggagattcttcagtattgaaaccaggtcagattattacacct
cgtgaattacgtgatgaaaactcattattgaaacgaaatgatagaaatcttgttgtagca
agagacgtaattactgcaactgcaacgccagttcttcaaggtattacaagagcttcgtta
caaactaaatcattcatctctgctgcttctttccaagaaacaacaaaagtacttaacgaa
gctgctgtagctggtaaagtagatgatttagaaggattaaaagaaaatgtaattgttgga
cacagaattcctgcgggaactggtatgagagaatacgataacactatcgtaggatctaaa
gacgattacaacgaaatgatggctaataaagaagaatacatttattaa
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