Flavobacterium sp. GSB-24: FLGSB24_22410
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Entry
FLGSB24_22410 CDS
T10693
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flf Flavobacterium sp. GSB-24
Pathway
flf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FLGSB24_22410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flf03019
]
FLGSB24_22410
03009 Ribosome biogenesis [BR:
flf03009
]
FLGSB24_22410
Enzymes [BR:
flf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FLGSB24_22410
Messenger RNA biogenesis [BR:
flf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FLGSB24_22410
Ribosome biogenesis [BR:
flf03009
]
Prokaryotic type
rRNA helicases
FLGSB24_22410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDU25497
LinkDB
All DBs
Position
complement(2619389..2621308)
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AA seq
639 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDEKST
WLFSATMPQEVARIAKQFMSDPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFITYYKKNRDISAQSGERRERGDSEPREFNNNGAVRYFVNIGSRDNFDWMSLK
DYLKETLDLGRDDIFKVDVKEGFSFFNTDPQHTDKVMDVLNNVQLEGRRINVEISKNDGG
GRRDHNNRGGGRSSGPRREGNFAPRREGSGGGFRSDRNSSRDGGSREGGFRSDRNSSAPR
REGGFRSSAPRNENGSSERAPRRSENFGDSPRPRRSRRD
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acagatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgctgacaacagaaacacacaagcattagttttatcgccaaca
cgagaactttgtttacagattaccaacgaacttaaaaactactcaaaatacgaaaaaggt
attaatgtggtagcagtttacggcggggctagtattacagagcaagctagagacattaaa
agaggagcgcagattatcgttgcaactccaggaagaatgcaagacatgattaatagaggt
ttggttaacattaaaaatatagattactgtattcttgatgaggctgacgaaatgttaaac
atgggattctatgaggatatcgtatctattttatcagatactccagacgaaaaaagtaca
tggttgttctctgcaactatgccgcaagaggttgctagaattgcaaaacaattcatgagt
gacccagttgaaattactgttggagccaaaaactcaggttctgcaacagtttctcatgaa
ttttacttagtaaatgctcgtgaccgttatgaagctttgaaacgtttagctgatgctaat
ccagatattttctctgtagttttctgtcgtacaaaaagagacacacaagctattgctgaa
aaattaatcgaagacggatacagtgctgctgctttacacggagatttatctcaagcacag
cgtgatggtgtaatgaaatctttccgcggaagacaaattcagatgcttgttgctactgac
gttgctgcgcgtggtattgacgttgataacgtaacacacgttgtaaactaccaattacct
gatgaaattgaaacttacaaccaccgttctggtcgtactggtagagctggaaaattagga
acttctattgtaattgttacaaaaagtgagttgcgtaaaatttcttctatcgaaagaatc
atcaaacaaaagtttgaagaaaaaactattccatctggaattgaaatctgcgaaatccaa
ttattgcacttagcaaataaaattaaagatactgaggttgatcacgaaattgacaactat
ttaccagcaattaacaatgttcttgaagatttatctaaagaagaattgattaagaaaatg
gtttctgtagaatttaaccgtttcattacttattacaaaaagaacagagatatttctgct
caatctggagaaagacgcgaaagaggagattctgaaccaagagaattcaataataacgga
gcagttcgttattttgtaaacatcggttctagagacaattttgactggatgtcattaaaa
gattacttaaaagaaacattagatttaggtcgtgatgatatctttaaagttgatgtaaaa
gaaggtttctctttctttaacactgatccacagcatactgacaaagtaatggatgtttta
aacaacgtacaattagaaggtcgtcgtatcaatgttgagatctctaaaaatgacggaggc
ggaagacgcgaccacaacaatcgtggcggcggaagaagttctggaccaagaagagaagga
aactttgctccaagacgtgaaggttctggaggcggatttagaagcgacagaaattcttca
agagacggaggatctagagaaggtggttttagaagcgacagaaattcatctgctccaaga
agagaaggtggttttagaagttctgctccaagaaacgaaaatggttcttcagaaagagct
ccaagacgttctgaaaactttggcgacagcccaagaccaagaagatctagaagagattaa
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