Flavobacterium sp. GSB-24: FLGSB24_26370
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Entry
FLGSB24_26370 CDS
T10693
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
flf Flavobacterium sp. GSB-24
Brite
KEGG Orthology (KO) [BR:
flf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
flf03016
]
FLGSB24_26370 (rtcB_1)
Enzymes [BR:
flf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FLGSB24_26370 (rtcB_1)
Transfer RNA biogenesis [BR:
flf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FLGSB24_26370 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
FLGSB24_26370 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDU25893
LinkDB
All DBs
Position
3111237..3112628
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AA seq
463 aa
AA seq
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MGNKLSGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPEKYEGNGTW
GKVAEGLIKPVQVRMHQLKTTRAPFTIFGENEIDQQAKFQLYDSLKLPVSVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGREHQLEAILKDNTKFG
MYETHASRVDHDVFYKSEFQDIPLLKNLLPKAYKQLGSSGGGNHFVEFGIAKIDNPENEW
KLENGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGQECIVHRKGATPAAE
GQLGIIPGSMTAPGYIVKGKGNAESLNSASHGAGRLFSRAKCKSTFTQSEIKKVLKANDV
TLIGGNIDEAPMAYKDITKVMANQTDLVEVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatctggaaaagacctgattaaattgggatttccaaaaaacaattca
ataaatatcgccttagggcagataaacagatatagaaaaagagaaaaaaaggaatctatt
ctaacagaagcaaaagatgtcttgctaaatcctgaaaagtacgaaggaaacggaacctgg
gggaaagtagccgaaggcttgataaaaccagttcaagtaaggatgcatcagttgaaaaca
accagagctccttttacaatttttggtgaaaatgaaatcgatcagcaggcaaaatttcaa
ttgtatgattctttgaaactgccagtttcggttgcaggagctttaatgccagacgcacat
tctggatatggtttaccaatcggcggtgttttagcaaccgataatgctgtgattccatac
ggagttggggttgatattggatgccgaatgagtctctcaatatttgatttgccagcttct
cattttaaagggagagagcatcagcttgaggctattttaaaagacaataccaagtttggg
atgtatgaaacgcatgcatcaagagtagaccatgacgttttttataaaagtgaatttcaa
gatattccgctgttgaagaatcttttacctaaagcttacaaacaattgggatcttcaggc
ggaggaaatcattttgtagaatttggaattgctaaaatcgataacccagaaaacgagtgg
aagctcgaaaatggggagtatttcgctgttctttcgcatagtggttcgcgtggtttgggc
gcaaacattgccaaacattatacttatttggcgacaaagcaatgtccgttaccaaaaaat
gtgcagcatttagcatggctggatttgaatacacatgatggtcaggaatattggcttgca
atgaatttagctggagaatatgcaaaagcttgtcatgatgatattcatagaagaattgcc
aaagctattgggaaaagagtagtagtaacgatagaaaatcaccacaattttgcctggaaa
gaaatggtaaatggtcaagaatgtattgttcataggaagggagcaacgccagcagctgaa
ggtcaattgggaattattccgggttcgatgactgcgcctggctacattgtaaagggtaaa
ggaaatgcagaaagtttaaactctgcctctcatggagctggccgtttgttttcgagagca
aaatgtaaaagtacttttacgcaaagtgagatcaaaaaggttttgaaagccaatgatgta
accttgattggaggaaatattgacgaagctccaatggcgtacaaagacattacaaaagtt
atggcgaatcaaaccgatttagtagaagttttgggaacttttacgccaaagatcgttaga
atggatcgttaa
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