Flavobacterium sp. GSB-24: FLGSB24_38990
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Entry
FLGSB24_38990 CDS
T10693
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flf Flavobacterium sp. GSB-24
Pathway
flf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FLGSB24_38990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flf03019
]
FLGSB24_38990
Enzymes [BR:
flf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FLGSB24_38990
Messenger RNA biogenesis [BR:
flf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FLGSB24_38990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
BDU27155
LinkDB
All DBs
Position
4715386..4716636
Genome browser
AA seq
416 aa
AA seq
DB search
MLFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKQIRALVVTPTRELAVQIGQSFDTYAKYTNLTQLTIFGGVSQNPQVE
ALKNGIDILVATPGRLLDLHKQGFLDLDHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLQDPEKVEVSPVSSTAENVEQRIYFVDKTEKRNLLYSLI
KEENLSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDELPYWKDI
QKLIKVDVKTIADHPYQWQSGSPEAGEKPKNSSNRSGGAHKSRKSNTSKKNKKRWY
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcactttcaaaaagtatacaaaaagccgtatttgaagaaggc
tatttaaatccgacaccaattcaggaaaaatctattccgatagttttagcaggtcgtgat
ttaattggctgcgcgcagacagggacaggaaaaacggcagcatttgctattccaatcata
catcaattacatagaattgtcggttcatcaaaaaaagcgaaacaaattcgtgctcttgta
gttacgcctacacgtgaattagcggtacaaattggccagagttttgacacttatgctaaa
tatactaatttaacacagctgacaatttttggaggtgtatctcaaaaccctcaagttgag
gctttaaaaaatggaatcgatattttagttgcgactccaggacgtttgcttgaccttcat
aaacagggttttctagatttagaccatctgcacactttagtgctcgatgaagctgatcaa
atgctggatatgggttttattaatgatgtcaaaaaaatcgtaaaacttacaccaaagaac
agacaaactttacttttctctgctacaatgccaattgcaattcgcgaactggcagaaatg
tttttgcaggatccagaaaaagtagaagtatctcctgtttcatcaacagccgaaaatgta
gaacaacgcatttattttgtagataaaactgaaaaaagaaacttgttgtatagtttaatt
aaagaagaaaatttatcaaatgtgcttgttttttcaagaacaaaacatggtgctgacaat
gttgttaaagcgcttcgtaaaaaagatattccagcagaagccattcacggagacaaatct
cagaatgcaagacaaagagttttagacgcttttaagaataaagaagttggtgttttggtt
gctacagatattgcggctagaggaattgacattgagcaactgccgtatgtgattaatttt
gatttaccgaatatcccagaaacttatgttcaccgtatcggtcgtacaggtcgtgcagga
aatggcggaattgcaatttctttctgcggaaaagatgaacttccatattggaaagatatt
cagaaattaattaaagttgatgtaaaaacaatcgcagatcacccttatcaatggcagtct
ggaagtcctgaagctggagaaaaaccaaaaaattcttctaatagaagcggtggagctcat
aaatcaagaaaatcaaatacttctaagaaaaacaaaaaacgctggtactaa
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