Flavobacterium sp. GSB-24: FLGSB24_40970
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Entry
FLGSB24_40970 CDS
T10693
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
flf Flavobacterium sp. GSB-24
Brite
KEGG Orthology (KO) [BR:
flf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
flf03016
]
FLGSB24_40970 (rtcB_2)
Enzymes [BR:
flf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FLGSB24_40970 (rtcB_2)
Transfer RNA biogenesis [BR:
flf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FLGSB24_40970 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
FLGSB24_40970 (rtcB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDU27353
LinkDB
All DBs
Position
complement(4943235..4944656)
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AA seq
473 aa
AA seq
DB search
MKTQINGTDILELGFPEGKIIGIALKINSKRNGFTRDEMIANFKNVLETPENYIDDKIFS
KLAVALIEKSNEKPEDFIALNQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPD
AHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIPEAFYFENEAKFKKELIANSI
FGAGHGFHGQYKSDHAVLENDTFDMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDECKLPEVAKNLAYLDMNSQLGQE
YWMAMNLAGDYASACHEIIHNKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGAT
PAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTQAIKNITKTEMKSILQ
DHGVTLIGAGLDEAPMAYKDINQVMEAQQDLVDVVAKFTPKLVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacaaataaacggtacagatatattagaattaggattcccagaaggaaaaata
attgggattgctttaaaaataaacagcaaaagaaacggatttacaagagacgaaatgatt
gccaatttcaaaaacgttttagaaactccggagaattatatagacgataaaatcttcagc
aaactggctgtcgctttaatcgaaaaatccaatgaaaaaccagaagattttattgcttta
aatcagaatccgaatgcgtattcggcttacggattagatcatatcgaagacggagccaga
aaacaaatggaagtggccatgaaactgccagtgacagttgcaggagctttaatgccagac
gcacaccaaggttacggactgccgattggcggagttttagccacaaaaaatgccattatt
ccgtatggtgttggggttgatattgggtgtagaatggcgttgtcggtttatgatattccg
gaagctttttactttgaaaacgaagctaaattcaaaaaagaattaatagccaattcgatt
tttggagcgggtcacggatttcacggtcagtacaaatcagatcatgcggttttggagaat
gatacctttgatatgaatccgtttgtgaagaatttgaaggataaagcctggtctcaatta
ggatcttctggtggtggaaatcactttgtggaattcggaatcatggaatttgcaaaagac
gatgcggttttgaatatcccaaaagggaaatatgtcgctttgttaacgcattctggttcg
cgcggaatgggtgccacaattgcgggacattatactaaaattgccaaagacgaatgtaaa
cttcccgaagtggccaaaaacttagcgtatctggatatgaactcacaattgggtcaggaa
tactggatggcgatgaatttggcgggcgattatgcttcggcttgtcacgagattattcat
aacaaaatggaacgcgctttgggtgcgacgattttagccaaagtcgaaaaccaccataat
tttgcttggaaagaaatctggaacggcgaagaagttatcgtgcatagaaaaggagcaacc
ccagccggaaaaggcgttatgggaatcattcccggaagtatgactgcgccaggatttttg
gtgagaggaaaaggcgaggagaacgccattaattcggcttcacacggagcaggacgacaa
atgagcagaacccaagcgatcaaaaacattaccaaaaccgagatgaaatccatcctgcaa
gatcatggcgttacgcttatcggtgcaggtctggacgaagcgccaatggcgtataaagat
atcaatcaagtgatggaagcacaacaggatttggttgatgttgtggcgaagtttacgccg
aaattggttcgaatggcagatgatggaagccgtgaggattga
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