Flagellimonas sp. HMM57: LV716_04220
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Entry
LV716_04220 CDS
T07897
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
flg
Flagellimonas sp. HMM57
Pathway
flg03030
DNA replication
flg03410
Base excision repair
flg03420
Nucleotide excision repair
flg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV716_04220 (polA)
03410 Base excision repair
LV716_04220 (polA)
03420 Nucleotide excision repair
LV716_04220 (polA)
03440 Homologous recombination
LV716_04220 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flg03032
]
LV716_04220 (polA)
03400 DNA repair and recombination proteins [BR:
flg03400
]
LV716_04220 (polA)
Enzymes [BR:
flg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LV716_04220 (polA)
DNA replication proteins [BR:
flg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LV716_04220 (polA)
DNA repair and recombination proteins [BR:
flg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LV716_04220 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LV716_04220 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
UII77001
LinkDB
All DBs
Position
959533..962367
Genome browser
AA seq
944 aa
AA seq
DB search
MSDQKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAIMGFMNSLFDVIKREKPDHLAV
CFDKGGSVERTELYEAYKANRDETPDAIRIAIPYIQNILNAMQIPVVELEGFEADDIIGT
LAKQAEKEDYKVFMVTPDKDFGQLVSENIFMYRPARMGNGIEIWGIPEVQKRFGVQRPEQ
VIDYLGMMGDASDNIPGLPGVGDKTAKKFIADFDSMEGLLANTDKLKGKMKEKVEQNAEL
GRLSRKLAEININCEVTFNANDYEMSEPDSPKVQEIFEELEFRRLKDQFIKIFSGEAEQI
AQVSSTETAKKEAKVAGSGQFTLFGGSPTDAPATIKDENSRNTVTTVPHFYQSIEPGLGM
QLFMKKMMQQSSVCFDTETTSLNALEAELVGIAFSWEAKKGFYIPIPEDKETASKILEEL
RPFFESEAIEKIGQNLKYDIKVMKNYGIEVKGKLFDTMLAHYLINPDMRHNMDVLAETYL
NYTPVSITELIGKKGKNQLSMRQVALDKQTEYAAEDADITLQLAQHFRPELSEAKTEELF
ESIEIPLLRVLADMETEGINLNEDFLNELSTVLDVDIKNLEQKIYKAAGEEFNIASPKQL
GEILFNKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEIIQNVLDYRGLAKLKSTYVDALP
NEVQQHSGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFIPRDENYTLLAA
DYSQIELRIIAALSEEDTMIEAFKNGEDIHASTASRVFNVPIEEVTREQRSNAKTVNFGI
IYGVSAFGLSNQTDLTRAESKELIETYYKTYPKLRNYMGEQVDFARDNGYVQTVLGRRRY
LKDINGSNAVVRGAAERNAVNAPIQGSAADIIKIAMINIHKKLSEGDYKTKMLLQVHDEL
VFDAYKPELEEVKTMIKTEMENAYTLAVPLDVEVGIGDNWLEAH
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaccaaaaaagactttttcttttagatgcttacgctttaatttttcgtggatac
tatgcccttatcaaaaatccaagaatcaattccaagggtatggacacctctgcaatcatg
gggttcatgaattcgcttttcgatgtcataaaacgggaaaagccagatcatttggcggtc
tgttttgataaaggcggaagtgtggaacgcacggaactatatgaagcttataaagccaat
cgtgatgagactccagatgctatacgaattgcaattccttacattcaaaacattttaaat
gccatgcaaatcccagtggtggaattggaaggatttgaagcagatgatattattggcaca
ttggcaaaacaagctgaaaaagaggactacaaggtatttatggttactccggacaaggat
tttgggcagttggtctccgaaaacatctttatgtaccgtcctgctcgaatgggcaatgga
attgaaatttggggcattccagaagttcagaaacgttttggcgtacaaagacccgaacag
gttatcgattatttggggatgatgggagatgccagtgacaatatccctggtcttcccggt
gttggcgataagactgccaaaaagtttattgccgattttgattccatggaaggccttttg
gccaataccgataagttaaagggcaagatgaaggagaaggtagaacagaatgccgaattg
ggaagattatcccgaaaactggctgaaatcaatatcaattgcgaggtaaccttcaatgcc
aacgattatgaaatgtcggaaccggacagtccaaaagtgcaggagatttttgaggaattg
gaatttcggcgcctaaaagaccaatttataaagattttctcaggggaagctgaacaaatc
gcacaagtttccagtacggaaaccgccaaaaaagaagcaaaggtagcaggtagcggacaa
ttcacattgtttgggggaagtccaacagatgcacccgccacgatcaaagatgagaacagt
agaaatacagtaactactgttccccatttttaccagagtattgaacctggtttgggaatg
cagctctttatgaaaaaaatgatgcagcaaagttcggtctgttttgataccgaaacaacc
tcattaaatgcacttgaagccgaattagtgggcattgcctttagttgggaagcaaaaaaa
ggattttacatccctatcccagaagataaagaaacagcttcgaagattttagaggaactt
cggcctttctttgaatctgaagctatagaaaaaattgggcaaaacctaaagtacgatatc
aaagtgatgaaaaactacggtattgaagtaaaaggaaaattgttcgacaccatgttggca
cattacctcatcaatccagatatgcgccacaatatggatgtattggccgaaacatacctc
aactacacacctgtttccattaccgagctcattggtaaaaaagggaaaaaccagttaagt
atgcgacaggttgccctggacaagcaaaccgaatatgcagctgaagatgccgacattacc
ttacaattggcacaacattttagaccagaactttcagaagcaaagaccgaagaactattt
gaaagcattgagattcccctacttagggttttggccgatatggaaaccgaaggaatcaat
ctcaatgaggattttcttaatgagctctcaacggttcttgatgtggatatcaaaaatcta
gagcaaaaaatctataaagctgctggagaggaatttaatatcgcatcgccaaaacaattg
ggtgaaatcctattcaataagctgaagttggtcgataaacccaaaaagacaaagacaggg
cagtattccactgcggaagatgtactctcctatttggccaaagatcatgaaatcattcaa
aatgtgttggactatagaggtcttgccaagttaaaaagcacttatgtggatgcactacct
aacgaggtacagcagcatagcggtcgggtgcataccgattacatgcagactgttgctgcc
acagggcgacttagcagcaataatccaaatctacagaatatccccattagaacggaacgt
ggccgacaggttcgaaaagcttttataccaagggatgaaaactacaccttgctagcggct
gattattcccaaatagagttacggatcattgcagctttgagcgaagaagatactatgatt
gaagcttttaaaaatggtgaggatattcatgcctctacagcttcaagggtattcaacgtt
cccattgaagaagtcacacgcgagcaacgaagcaacgccaaaacggtgaattttggaatc
atttatggtgtttcggcgtttgggctgagcaaccaaacagatttgacacgtgccgaatcc
aaggaactgatagaaacctattacaagacgtatcccaagcttagaaattatatgggcgaa
caggtagattttgcccgggacaatggctatgtacagactgtcctgggaaggcgtaggtat
ttaaaggacatcaatggcagcaatgctgtagtacgaggtgcagcagaacgaaatgcggta
aacgcgcccattcaaggaagcgcagcggatatcattaaaatcgccatgatcaacatccac
aaaaagctttctgaaggagactacaaaacaaaaatgttgttacaggtacatgatgaattg
gtttttgatgcctacaaaccggaattggaagaagtaaaaaccatgataaaaaccgaaatg
gaaaatgcttacacgcttgctgttcctttagatgtggaagtgggcatcggagataattgg
ctggaagcgcattag
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