Flagellimonas sp. HMM57: LV716_07690
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Entry
LV716_07690 CDS
T07897
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
flg
Flagellimonas sp. HMM57
Pathway
flg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV716_07690 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flg03019
]
LV716_07690 (rnr)
03016 Transfer RNA biogenesis [BR:
flg03016
]
LV716_07690 (rnr)
Enzymes [BR:
flg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LV716_07690 (rnr)
Messenger RNA biogenesis [BR:
flg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LV716_07690 (rnr)
Transfer RNA biogenesis [BR:
flg03016
]
Prokaryotic type
tRNA degradation factors
LV716_07690 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
CRASP-2
Motif
Other DBs
NCBI-ProteinID:
UII77639
LinkDB
All DBs
Position
complement(1731538..1733736)
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AA seq
732 aa
AA seq
DB search
MSKKKKRARSQRKNEITRGIFTVLEKEPSKTFNYKQISAKLGIIDTQGRNELIKRLGQLK
ASDRILEVENGKFKKKPSLHTYFTGTVDLTSSGNAYIIIDDMDDDVFVPYNRLNKALHGD
TVEIFLKPKRKGKKEEGEIATVIERKKTSYVGIVDKQKTFAFVRPSDSRMYTDIFIPMEK
LKNAEDGDKVLVDLGEWPDNADSPYGEVTQILGKPGEHNTEIHSILAEYGLPYEFPYEVE
QFANTLDTSIKESEIAKRRDMRDVLTFTIDPKDAKDFDDALSFQKLENGNYEIGIHIADV
SHYLQPNTVLEDEAYERATSVYLVDRVVPMLPEVLSNNACSLRPNEEKYTFSAIFEMDDK
ANLTNQWFGRTVIDSNERFAYEEAQHIIETGKGIIPDDISIRKSGYKVSEEVVEATLTFD
KLAKIMRKQRMDDGAISFDKIEVRFNLSENNEPEGVYFKEAKDANKLIEEFMLLANKKVA
EFIGKQKKTFVYRIHDEPDEEKLMALNGVISKFGHSINLRDKKSLNSSLNQLLKDVKGKK
EQNLVDTLTIRSMSKATYTTENIGHYGLGFEYYTHFTSPIRRYPDVMVHRLLQHYLDGGK
PPKEMVYEEKCKHSSSMEILAASAERDSIKYMQIKFMEDHKDSEFVGVISGVTEWGIYVE
IVENKCEGMVRIRDIKDDYYTFDERQYAIIGERTKRMYQLGDEVYVMVKHTDLVKRHLDF
SLIGKKSNTILE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaaagaagagagctagaagccagcgaaagaatgagattacaagaggcatt
tttacagtacttgaaaaagaaccttcaaaaaccttcaattataaacagatcagcgcaaaa
cttggtattatcgatacacaaggacgtaacgaacttattaagcgcttaggccagcttaaa
gcaagtgaccgaattttagaagtagaaaatgggaagtttaagaagaaaccctcacttcat
acgtattttacgggaacagtcgatttgacttccagcggaaacgcatacattataatcgat
gatatggatgatgacgtttttgtcccctacaacagattgaacaaagcgctgcatggtgat
accgtagaaatttttcttaaaccaaaacgtaaaggaaaaaaagaagagggagagatagct
actgtcattgagcgtaaaaagacttcctacgtagggattgtggacaagcaaaagacgttc
gcttttgtaagaccgtccgattcacgaatgtataccgatatttttattccaatggaaaag
ctaaaaaacgctgaagatggggacaaggtgttggtagatttgggagaatggccagataat
gccgattcaccttacggagaggtgacacaaattctaggcaaaccaggagaacacaatacg
gagatacactctattttagcggaatacggactgccttatgaatttccatatgaagttgag
caatttgccaatacgttggatacctccattaaggaatctgaaattgcaaaaagaagggat
atgcgggatgtgctcacgtttaccatagatcccaaagatgccaaagattttgatgatgca
ctttcctttcaaaaactggaaaatggcaattatgaaataggaattcatattgcggatgta
tcgcactacttgcaaccaaatactgttttggaagacgaagcatacgaaagggcaacttca
gtttatcttgtagatagagtggttcctatgttgcccgaagtattatccaacaatgcttgt
tctttaagacctaacgaagagaaatatacattttctgccatttttgaaatggatgataaa
gccaatttaacaaatcaatggtttgggagaaccgtaattgattccaatgagcgttttgcc
tatgaagaagcgcagcatattatagagacgggaaaaggaataattccagatgatatctct
attaggaagtcgggttataaagtctcggaagaagttgtagaagcaacattgacctttgat
aaattggctaagatcatgcgaaaacaacgtatggacgatggggctatttcttttgataaa
attgaggtaaggttcaatctatctgagaacaatgaaccagaaggtgtttattttaaagaa
gcaaaagatgccaataaattgattgaagagttcatgcttttggcaaataaaaaagtcgca
gaatttataggtaaacaaaagaaaacctttgtctaccgtattcatgatgagccagacgaa
gaaaaattaatggcgctgaacggagttatttcaaaatttggtcatagtataaaccttagg
gacaaaaagagtcttaatagctctttaaatcaactcttgaaagacgtaaagggaaagaaa
gagcaaaaccttgtggatacccttaccattagaagtatgagcaaggcaacctataccaca
gaaaatatagggcactatggtttgggatttgaatactatacgcattttacatcgcccata
agaagatatccagacgtaatggtacatagactgttacagcattatttagatggtggaaaa
ccgccaaaagaaatggtctacgaagaaaaatgtaaacattcctccagtatggagattctt
gcggcaagcgcagaacgggattctataaaatacatgcagatcaagttcatggaggaccat
aaggactcagaatttgtgggtgtcatatccggagtcacagaatggggcatttatgtggaa
atagtcgaaaataaatgtgaaggtatggtacgaatacgcgatattaaagatgactattat
acatttgatgaaagacaatatgccatcataggcgagcgaacaaaacgtatgtaccaatta
ggtgatgaagtttatgtaatggtaaagcatacagatttggtaaaacggcatttagatttt
tcgttgatcggtaagaaaagtaatactattttggaataa
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