Flagellimonas sp. HMM57: LV716_13415
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Entry
LV716_13415 CDS
T07897
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
flg
Flagellimonas sp. HMM57
Pathway
flg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV716_13415 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flg03019
]
LV716_13415 (rny)
Messenger RNA biogenesis [BR:
flg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LV716_13415 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF6056
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UII75250
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Position
3010716..3012287
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AA seq
523 aa
AA seq
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MDNTILIIVAAVVGVVIGFAIAKMMEKGKATKTISAAKKEAQDILKEAKKEGENIKKDKI
FQAKERFLELKAEHEKVIINKDKKIAEAEKRTRDKESQISNELAKGKKLNDQLQEKIKDV
NYKSEILDKKQSEVDKLHKSQVQQLEVISGLSAEDAKSQLLESLKETAKTDAMAYLQTTL
EETKLTAQQEARKIVINTIQRIGTEEAVENCVSVFNLESDDVKGRIIGREGRNIRALESA
TGVEIIVDDTPEAIILSCFDSVRREVARLSLHRLVTDGRIHPARIEEIVKKTEKQINEEI
VEIGKRTVIDLGIHGLHPELIKAVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNPK
IAKRAGLLHDIGKVPNTEVEVETPHAILGMQWAQKYGENKEVCNAIGAHHDEIEMNTLVS
PIVQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFHGVQKAYAIQAGRELRVIVESE
KVSDDKAAELSFEISQKIQTDMTYPGQVKVTVIRETRSINVAK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggataatactatattaattattgtagcagcggtcgtgggagtggtgataggttttgca
attgccaaaatgatggaaaagggaaaggctacaaaaaccatttctgcagctaaaaaagaa
gcgcaggatattttgaaagaagctaaaaaagaaggggaaaacataaaaaaagacaaaata
tttcaggccaaagaacggtttttagagttgaaggcagaacatgaaaaagttattataaac
aaggataaaaaaattgccgaagctgaaaaacgtacacgagataaagaatcccaaatcagc
aacgaactcgccaaaggcaaaaaattgaacgatcaactgcaagagaaaatcaaggatgtc
aattataaaagtgagattcttgataaaaagcagtcagaggtagataaattgcacaaaagc
caagtgcaacaattggaagtgatttccggcctttctgcagaagatgcaaaaagccaatta
ctggaatccctaaaagaaacggctaagacagatgcgatggcttaccttcaaactacgttg
gaggagactaaattaaccgcacagcaagaagcaaggaaaatcgtaatcaataccattcag
cgtattgggaccgaggaagctgtggaaaactgtgtatctgtttttaatttggaatccgat
gatgttaaaggtcgtataattggtagggaagggcgcaatatccgtgctcttgaatctgct
accggcgtagagattatagttgatgatacaccagaggccattatcctttcttgttttgat
tctgttagaagggaagttgcaagactttccttgcatcgacttgtaaccgatggtagaata
catcctgcacgtattgaggaaatcgttaaaaagaccgaaaaacaaatcaatgaggaaatt
gttgaaataggtaagcgtactgtaattgatctggggatacacggtcttcatccagaattg
attaaagcagtaggtcgtatgaagtatcgttcctcttatggacaaaacctattgcagcac
tcaagggaagtggctaaactttgtggtgtaatggcagcagaattgggcctcaatcctaaa
atagccaagcgtgccggattattgcacgatattggcaaagttcccaataccgaagtagag
gtagaaacaccgcacgcgatactaggaatgcagtgggcacaaaaatatggtgagaacaaa
gaggtttgcaacgcaattggtgcccaccacgatgagatagaaatgaataccttggtttct
cccatagtacaggtgtgcgatgctataagcggtgccaggccgggagctagaagacaggtt
ttggattcttacatccaaagattaaaagatttggaagatatcgcatttggatttcatgga
gttcagaaagcatatgccattcaagcaggtagagaattacgtgtcattgtggaaagtgaa
aaggtaagcgatgataaagcggccgagttatcttttgagatttcccaaaaaattcaaaca
gatatgacatatcctggtcaagttaaggtaacggtaatcagagagacgcgatctataaac
gttgccaaataa
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