Flagellimonas sp. HMM57: LV716_14925
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Entry
LV716_14925 CDS
T07897
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flg
Flagellimonas sp. HMM57
Pathway
flg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV716_14925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flg03019
]
LV716_14925
03009 Ribosome biogenesis [BR:
flg03009
]
LV716_14925
Enzymes [BR:
flg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LV716_14925
Messenger RNA biogenesis [BR:
flg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LV716_14925
Ribosome biogenesis [BR:
flg03009
]
Prokaryotic type
rRNA helicases
LV716_14925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UII77998
LinkDB
All DBs
Position
complement(3368884..3370650)
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AA seq
588 aa
AA seq
DB search
MTKFEALGLDKPLLDAISDLGFESPSEVQEKAIPILLEQETDLVALAQTGTGKTAAFGFP
MIQKIQSESRTTQGLILSPTRELCLQITNELKLYSKYVKGLNTVAIYGGASITDQARQIK
RGAQIIVATPGRMKDMIGRRMVDISKIDYCVLDEADEMLNMGFFEDIKDILSNTPQEKLT
WLFSATMPKEVSVIAKKFMHKPQEITVGTKNAGASTVQHEYYVVGGRDRYPALKRLADAN
PGIFSVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQVQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRKIKAIENK
IKQDFLSKKIPSGIEICEIQLYHLANNIKETKVNTEIDHYLPAINDVLDGIDRDELIKKI
VSVEFTRFYSYYSKTRDLNSSDDGGNRGERNKNGKDGAPSNGSVRYFINVGERDGYDWMS
LKDFLRDTLNLEKEEVFNVDTKDSFSFFNTDAKVTEHVLQTFTEFKVDGRFINVEVSKNP
GGSGRGGKKRDRNRGHRKGGDNRSYKGGRKNNSGRKGGKGGKKRSGFY
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagccttggggttggacaaaccccttttggatgctatttccgatctt
ggatttgaatccccctcagaagtacaagaaaaagcaattccgatcttattggagcaagag
accgatttggtcgcactcgcacaaacaggaacaggaaaaaccgcagctttcggttttccc
atgattcaaaaaatacaatcggaaagtaggactacgcaaggacttatcctctctcctacc
cgtgagctttgcttacagataacgaacgaactcaagctatactcaaagtacgtcaaaggg
ctcaacaccgtagctatttatggtggtgccagtattacggaccaggcaagacaaataaag
cgtggtgcacaaataattgttgccacaccaggccgaatgaaagacatgatcggcagaaga
atggtcgatatttctaaaattgactactgtgtattggatgaggccgatgaaatgctgaac
atgggcttctttgaggacataaaggatattttgtccaatacgccccaagagaaattaacc
tggttgttttctgcaactatgccgaaagaggtttcggtcattgcaaaaaaattcatgcac
aaaccccaagaaattacggttggtacaaaaaatgcaggtgcttctacggttcagcatgaa
tattatgtggttggtggacgtgatcgttatcccgcattgaaacgattggcagatgcaaat
ccaggtatcttttcggtaatattctgtagaaccaaaagggatacgcaaaaagttgcggaa
aaacttattgaagatggttacaacgcaggagcgttgcatggagatttgagtcaaaatcag
cgtgaccttgtcatgaattcgttcagaaagaaacaggtccagatgctcgtggctacagac
gtcgctgcccgaggaatagatgtggacgatataacccacgttatcaattaccagttacca
gatgagatagaaacctatactcacagaagtgggcgaacaggacgtgcaggaaaatccggt
atttccatggtcatcgttacgcgttctgaaatgagaaaaataaaggccattgagaataaa
atcaaacaggactttttatccaagaaaatcccatcaggtatagaaatttgcgagatacaa
ctgtaccatttggcaaataatatcaaggagacaaaagtcaataccgagatagaccactac
ctacctgcaatcaatgatgtcttggatggtatagacagggacgaactcatcaagaaaatt
gtatcggtagagtttacacgtttttatagttattacagcaagaccagagatttaaactcc
tctgatgacggcggaaatcgtggcgaaagaaacaaaaatggaaaagatggtgcgccctcc
aatggatcggtgcgttactttatcaacgtaggggaacgggatggttatgattggatgtcc
ttaaaagacttcttgcgggacaccctaaacttggaaaaagaagaggtcttcaatgtagat
accaaggatagtttttccttttttaatactgatgccaaggttacggaacatgtattacaa
accttcactgaatttaaggtagacggtcgttttatcaatgtagaagtatccaagaacccc
ggaggttctggaagaggtggcaaaaaacgcgatagaaaccgaggccatagaaaaggcggt
gacaatagatcgtacaaaggaggtagaaaaaacaattcaggcagaaaaggaggtaaagga
ggtaaaaaacgttctggcttctattag
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