Flaviflexus ciconiae: EJ997_05030
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Entry
EJ997_05030 CDS
T05772
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
flh
Flaviflexus ciconiae
Pathway
flh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ997_05030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flh03019
]
EJ997_05030
03009 Ribosome biogenesis [BR:
flh03009
]
EJ997_05030
Enzymes [BR:
flh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EJ997_05030
Messenger RNA biogenesis [BR:
flh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EJ997_05030
Ribosome biogenesis [BR:
flh03009
]
Prokaryotic type
rRNA processing factors
EJ997_05030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AZQ76799
UniProt:
A0A3S9PWR5
LinkDB
All DBs
Position
complement(1117812..1120664)
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AA seq
950 aa
AA seq
DB search
MAEEQADNSANASKPALPATYLLFQEPDPTTVIRRPAPEPQTGDDDDEERKPRRRGSRGR
GRSTDSSEQDQQDSRDKNMGGKDNKDHKDQDGDRYRKNQRNRRDNDNKDDQSDSDQSDDS
STASSDSDSDEKNDEPKTRTRTRSRSQRRSRDQDSDSDDSDDSNDSGNDSQDSDDTVGTT
RRRRRRRSTSSDEVTALKGSTRLEAKRQRRRDGREAGRRRHSITESEFLARRESVSRKML
VREQDGLNQIAVLEDDILVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDIGKGRNA
VLYAGEVNWEAAGLEGKPRRIESALSSGETVLVQVTKDPIGHKGARLTAQITLAGRHLVL
VPSGAMTGISRKLPERERQRLKKLLKEIVPAEHGVIVRTAAEGASEDQLRKDVERLTQKW
ADIQQKSKSAKSAPVLLKGEPELAVRVVRDVFNEDFESLHVQGNNTYSTIKEYVHELSPE
LDERVHKWVANKDVFTDARVDEQLAKAMDRKVYLPSGGSLVIDRTEAMTVVDVNTGRFTG
SGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRD
RTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCEGRGYHIHTQPVEKGDQPKQAPA
PQKQQQSKPAPTPPVVDKEETAKREEVKSALASIAAAAAQSHQEDEDKKEDAKPRGRRSP
ARRSESARNASTNGTDSASSSSIPDLTEDLSKLAFGASSKNNGSKGSDSQNVGSKNADSR
NASSKGSDSQGTADSDKSAGRDDRSGSRGRVSGKVGVSGKVQPGGSGTDSSGHSASSADS
AEKTASRSAQSRTAYSEPAAATPPAERKARRVASSGTIVTTSGGGAIIVAEKPKETAAKT
APKKPAPKPAGKPVEEKVEDENRKSRRSASSGTIIPKSSSAPGIMTFPTK
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagaacaggccgataatagcgcgaacgcttcgaagccggcactgccggcaacc
tacctcctcttccaggagcccgacccgacaacagtaatccgtcgcccggcacccgagccg
caaacaggtgacgatgacgatgaggagcgcaagccccgcaggcgcggctcccgcggccgc
ggccgctccaccgactcatcggagcaggatcagcaggacagccgcgacaagaacatgggc
ggcaaggacaacaaagatcacaaggaccaggacggcgaccggtatcggaagaatcagcgc
aaccgccgggacaacgacaacaaggatgaccagtccgactctgatcagtccgacgactcg
tctaccgctagctccgattctgactctgatgagaagaacgacgagcccaagactcgtacc
cgcacccgcagcaggtctcagcgcaggagcagggaccaggatagcgactccgatgattcg
gacgattccaacgactctggaaacgactcgcaggactccgatgacacggtcgggacgacc
cggcgccgcaggcgccgccggtccacctcatccgatgaggtgacggcactcaagggctcc
acgcgcctcgaagccaagaggcagcgccgcagggacggccgcgaggctggccgccgcagg
cactcgatcaccgagtccgagttcctggcacgccgcgaatcggttagccgcaagatgctc
gtacgcgagcaggacggcctcaatcagatcgctgtcctcgaggacgacattcttgtcgag
cactacgtggctcgccacacccaggtatccatggtcggcaacgtctaccttggccgggtg
cagaacgtgctgccctcgatggaggccgcgttcgtcgacatcggcaagggccgcaacgcc
gttctttacgccggcgaggttaactgggaggccgcaggcctcgagggtaagccaaggcgc
atcgagtccgccctctcctcgggcgagaccgttcttgttcaggtgaccaaggatccgatc
ggacacaagggtgcgcgcctcacggcccagatcactctcgctggtcgccatcttgttctc
gttccctccggagccatgacggggatttcccgcaagctccccgagcgggaacgtcagagg
ctcaagaagctcctgaaggaaatcgttcccgccgagcacggagtgatagtccgtacggcg
gccgaaggagcctcggaagatcagctccgcaaggacgtcgagcgccttacccagaagtgg
gccgatatccagcagaagtcgaagtccgccaagtcggcacccgtgctcctcaagggagag
ccggagctcgctgttcgcgttgtccgcgacgtcttcaacgaagacttcgagtccctccac
gtgcagggcaacaacacgtactccaccattaaggagtacgtacacgagctgtccccggaa
ctcgacgagcgggtccacaagtgggtcgccaacaaggacgtcttcacggacgcccgggtc
gatgagcagctggccaaggcaatggaccgcaaggtctacctgccctccggtggctcgctt
gtcattgaccgcacggaagctatgaccgttgttgacgtcaacacgggtcggttcaccggt
tccggtggcacactcgaagagaccgtcacgaagaacaacctggaagcggccgaagaaatt
gttcgccagctccgcctgcgcgacatcggcggcattatcgtcatcgacttcatcgacatg
gttctcgaatccaaccgggatctcgtgctccgccgtctcatcgaatgcctgggcagggac
cgtacccgccaccaggtagccgaagtaacctcccttggcctggtccagatgacgcgcaag
cgcgtcggacagggactcgtggaggccttctccacgacctgtgagcactgcgagggacgc
ggataccacatccacacccagccggtggaaaagggcgaccagcccaagcaggcccccgca
ccgcaaaagcagcagcagtcgaagcccgcaccgaccccgccggtggtcgataaggaagag
accgccaagcgcgaagaggtcaagtccgcccttgcttctatcgcagcagcagctgcgcag
agccaccaggaggacgaggacaagaaggaagacgccaagccccgcggcaggcgctcgccc
gcacgccgctccgaatccgcccggaacgcctccaccaacggaaccgattccgccagctct
tcttctatcccggacctcaccgaggacctttcgaagctcgcattcggcgcaagctccaag
aacaacggttccaagggctcggattcacagaacgtaggttcgaagaacgcggattcgagg
aacgccagctcgaaggggtcggattcgcagggaaccgctgactctgacaagtccgctgga
cgtgacgacaggtcaggttcgcgcggccgtgtctccggcaaggtcggcgtctccggtaag
gtccagccgggcggctcgggcacggattcctccggccattctgccagttcggctgactct
gcagagaagactgcttcaaggtcagctcagtccaggacggcctactccgagcctgccgct
gctacgcctcccgctgagcgtaaggctcgccgggttgcctcgtcgggaacgatcgtgacc
acttcgggtggcggggcgattatcgtggctgagaagccgaaggaaacggctgctaagact
gctcctaagaagcctgccccgaagcctgctgggaagccggtggaggagaaggtcgaggat
gagaaccgtaagtcgcggcgctccgcttcgtcgggcacgatcatcccgaagtccagctcc
gcaccggggatcatgaccttcccgaccaagtag
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