Bernardetia litoralis: Fleli_0736
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Entry
Fleli_0736 CDS
T02149
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fli
Bernardetia litoralis
Pathway
fli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fleli_0736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fli03019
]
Fleli_0736
03400 DNA repair and recombination proteins [BR:
fli03400
]
Fleli_0736
Enzymes [BR:
fli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fleli_0736
Messenger RNA biogenesis [BR:
fli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fleli_0736
DNA repair and recombination proteins [BR:
fli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Fleli_0736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
MarR
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AFM03196
UniProt:
I4AGW1
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All DBs
Position
831028..832962
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AA seq
644 aa
AA seq
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MPTLPQQILKKYWGYNAFRSMQEEIINSVMEGKDTLALLPTGGGKSICFQVPAMALEGVC
IVVTPLIALMKDQVFQLNKRGISAKAIYSGMSKREIDITLDNCVYNKNVKFLYLSPERLK
TDLFQQRVARMNVCLLAIDEAHCISQWGYNFRPAYLEIAAIRERIPNVPCIALTATATLQ
VRQDIQDKLEFRENSDKESNIFTKSFARENLSYSAFLIENKNQKMLQILNNVKGTGIIYV
RNRKKCKEIALWLRQQKISADFYHAGLTHAQRNHVQESWINNKIRVIAATNAFGMGIDKA
DVRTVIHTDLPDSLEAYYQEAGRAGRDEKKAYAISLFDKNDLLNLEKRTKQAHPEPQIIK
KVYQALANYFKIAVGSFPMESFNFDMDEFFRRFSIPYIETYNSVKILEEQGFLQLSENFY
VASKIWIKVDNATLYNFQIANEKSDKIIKGILRAYGGAFQQFISISEQNLAKFLNMSKMD
ITAHLNYLAQQNIIEYQPQKDVPQLSFLTARHNANDLPLDLELMETRKKEALQKAYSVIN
YLKNDMRCRTQILLHYFGEKTDKVCGVCDNCIQNKKSLNSSIQNEKNEDLKTQILEKLSS
DSIPIHQLNNHFLNIDAKVLGKTIQELLAVGMIGYDKRGNLARK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcccactctaccacaacaaattctaaaaaaatattggggatataatgcttttcgttcg
atgcaggaggagattataaattctgttatggaaggaaaagatacgcttgcacttttgcct
acaggtggaggaaaatcgatttgttttcaagttcctgcgatggctttggaaggtgtttgt
attgttgttacgccacttattgccttgatgaaagaccaagtttttcaacttaataaacgt
ggaatttctgcaaaggcaatttattcaggaatgtcaaaacgagaaattgatattactttg
gataattgtgtgtataacaaaaatgtaaaatttctctatctctctcccgaacgcctcaaa
acagatttgtttcaacagcgagtggctagaatgaatgtttgtttgttggcgattgatgag
gcacattgtatttctcaatggggttataattttcgccctgcttatctggaaattgctgcc
attagagagcgcattcccaatgttccgtgtattgctcttacggctacggctactttgcaa
gtgcgtcaggatattcaagataaattagaatttagagaaaatagcgataaagaaagtaat
atttttacaaagagttttgctagagaaaatttgtcgtattctgcttttttgatagaaaat
aaaaatcaaaaaatgctacaaattttgaataatgtaaaaggaacaggaattatttatgtc
agaaatagaaaaaaatgtaaagaaattgcactttggttgcgacaacaaaaaatttcagct
gatttttatcacgcaggacttacacatgcgcaaagaaaccacgtacaagaatcttggata
aataataaaattcgtgtcattgcagccaccaacgcttttggaatgggaatcgataaagct
gatgtcagaacagttattcataccgatttaccagattctttggaagcctattatcaagaa
gcaggaagagcaggaagggatgaaaaaaaagcctatgcaatttcactttttgataaaaat
gatttattaaatttagaaaaacgtacaaaacaagcacacccagagccacaaattatcaaa
aaagtatatcaagccttagccaattatttcaaaattgctgtaggaagttttccgatggaa
agttttaattttgatatggatgagttttttcgtcgtttttcaattccgtacatagaaact
tataattctgtcaaaatattggaagaacaaggttttttacaactttcagaaaatttttat
gtagcttccaaaatttggataaaagtagataatgcaacgttatataattttcaaattgca
aatgaaaaatctgataaaattattaaaggaatcttgagagcttatggaggagcttttcag
cagtttatctcaatttctgagcaaaatttagctaagtttttgaatatgtcaaaaatggat
attacggcacatctcaattatttggcgcagcaaaatatcattgaatatcaacctcaaaaa
gatgttcctcagctttcatttcttactgctcgtcataatgcaaatgatttgcctttagat
ttggagcttatggaaacacgaaaaaaagaagcattgcaaaaagcatattcagttattaat
tatctcaaaaatgatatgcgttgccgaacacaaattttattgcattattttggagaaaaa
acagataaggtttgtggagtttgtgataattgtattcaaaataaaaaatctttaaattct
tcaattcaaaacgaaaaaaatgaagatttgaaaactcagattttagaaaaattatcttct
gattctattccaattcatcaattaaataatcattttttgaatattgatgccaaagttttg
ggtaaaactattcaagaattattagctgtcggaatgattggttatgataaaaggggaaat
ttggctaggaaataa
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