Flavobacterium oryzagri: SCB73_20590
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Entry
SCB73_20590 CDS
T11723
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flk Flavobacterium oryzagri
Pathway
flk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCB73_20590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flk03019
]
SCB73_20590
Enzymes [BR:
flk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCB73_20590
Messenger RNA biogenesis [BR:
flk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCB73_20590
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
WPO78659
LinkDB
All DBs
Position
4901692..4902939
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AA seq
415 aa
AA seq
DB search
MLFEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPIILSGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKQIRALVVTPTRELAVQIGESFDTYGKYTNLTQLTIFGGVSQNPQVE
TLKKGVDILVATPGRLLDLHKQGFLDFDHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLKDPEKVEVSPVSSTAENVEQRIYFVDKTEKRNLLYHLI
KEENLSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEHPYWKDI
QKLIKVDVKVITEHPYQWHSGSPEAGEKPKNSNRSGGAHKSRKSNTSKKNKKRWY
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcactttcaaaaagtatacaaaaagccgtatttgaagaaggc
tacctaaatcccactccaattcaggaacaatctattccgatcattttatcaggaagagat
ttgattggttgtgcgcaaacaggtacaggaaaaacagctgcatttgcaatcccaatcata
catcagttacaccgaattgtaggctcatcaaaaaaagccaaacaaattcgcgcacttgtc
gttacgccaacacgtgaacttgcagtgcaaattggagaaagttttgacacttatggcaaa
tacaccaatttaacacaattaacaatctttggaggcgtttcgcaaaatccacaagttgaa
accttaaaaaaaggagtcgatattttggttgcaactccaggaagattgcttgatttgcac
aaacaaggctttcttgattttgaccatttgcatactttggttttagacgaagccgatcaa
atgctggatatgggattcataaacgatgtaaaaaagattgtaaagcttacgccaaaaaac
cgtcagactttattattctctgcaacaatgccgattgctattcgtgaattggcagaaatg
tttttgaaagatccagaaaaagtcgaagtttcgcctgtttcatcgaccgcagaaaacgta
gaacaacgcatttattttgttgacaaaaccgaaaaaagaaatttgctttatcatttgatc
aaagaagaaaatttatccaatgttttggttttttcaagaacaaaacatggcgctgataat
gttgtaaaagcgcttcgcaaaaaagatattccggcagaagccattcacggagacaaatcg
caaaatgcaagacaacgcgtcttggatgcttttaaaaacaaagaagttggcgttctagtt
gctaccgatattgcagcacgaggaattgacattgagcaattgccgtatgtaatcaatttt
gatttgcctaatattcctgaaacttacgtacaccgaattggtcgtaccggacgcgcagga
aatggcggaattgcgatttctttttgcggaaaagatgaacatccgtattggaaagacatt
caaaaactgataaaagttgatgtaaaagtaattactgaacatccgtatcaatggcattct
ggaagccctgaagcaggagaaaaaccaaaaaattctaacagaagcggaggcgctcacaaa
tcaagaaaatcaaatacttctaagaaaaataaaaaacgctggtactaa
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