Flammeovirga pectinis: EI427_06305
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Entry
EI427_06305 CDS
T05771
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fll
Flammeovirga pectinis
Pathway
fll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI427_06305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fll03019
]
EI427_06305
Enzymes [BR:
fll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI427_06305
Messenger RNA biogenesis [BR:
fll03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI427_06305
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
His_Phos_1
Helicase_C
ResIII
SNF2-rel_dom
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZQ61863
UniProt:
A0A3Q9FPY2
LinkDB
All DBs
Position
1:1564562..1566634
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AA seq
690 aa
AA seq
DB search
MSNSKRIYLVRHGQTAYNTKRIVQGRKIDADLNEIGQKQGKLLFDAYKDFKFDKLYVTSL
KRTHQTAKGFIDKGLDYEIIPEFDEMNYGDFEGNSIDDFTVDGKTVQSISDEWEAGNFDA
FPKNGEMLFDVLQRLAVGLENIMQNENERNVLICMHSRSIRIFLCLLLDLDFDEMKNFAP
KNTGVTTLEYNEYSGTFKLIEFNNVDHLGNDPELTYLPQKPGAENEQAAAIEEKRKEDEG
LGFRKFKLNKQLYSVCDELGYTEPTPIQDKAIPLVLSGHDLFGIAQTGTGKTAAYLLPLL
YKAKYAQGNDPRVLILVPTRELAIQVGKEVEKLAVYTGLRHAVVYGGIGPKTQIEEVEKG
IDLLVGTPGRVMDIYSRGKLKTKSIKYMVLDEADRIMDMGFMPQIRQMLEIIPRKRQNLL
FSATMPDVVVRLSEEFLEFPQRVEITPQATTAEMVDQFVYNVPNFMTKLHLLSYLMNTDA
SLSRIMVFVRKKEQANGVAAFLQRHTEGEVRVIHANKGQNARINSIDDFKDGDIRVLVAT
DVAARGIDVSMVSHVVNFDVPVMYHDYVHRVGRTGRANNTGVAYTFCNPAEKYHLLKIEE
VINKEIPVLEMPEGVEEQEATQHEARDMAMEIDRQKRKEDPNFKGAFHERKKNKDKVDKN
RRNKNKASIDKQRASGKVSAYITQGKSKKK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattcaaaaagaatttatttagttcgtcatggtcagacggcatacaatactaaa
aggattgtacaaggtcgtaaaattgatgcagatttaaacgaaattggtcagaagcaggga
aagttattattcgatgcttacaaagactttaaattcgataaattatatgttacatcttta
aaaagaacacatcagacagctaaaggatttattgataagggattagattatgaaatcatt
cctgaatttgatgaaatgaattacggtgattttgaaggtaactctattgatgattttaca
gttgatggaaaaaccgttcaaagtatctctgacgaatgggaagcaggtaattttgatgca
tttcctaaaaatggagaaatgcttttcgatgttttacaacgattagcagttggtttagag
aacataatgcaaaacgaaaatgaacgtaatgttcttatttgtatgcatagtcgctctatt
cgtatattcttatgtcttcttcttgatcttgattttgatgaaatgaagaattttgctcct
aaaaatacaggggtaactactttagaatacaacgagtactctggaacatttaaattaatt
gaatttaataatgtggatcatcttggaaatgatcctgagctaacatacctacctcaaaag
cctggagctgaaaatgagcaagcggctgcaattgaggagaagagaaaagaagacgagggg
ttaggtttcagaaaattcaaattaaacaaacaactctattctgtttgtgatgaacttggg
tatacagaaccaacacctatacaagataaagctattccacttgttttatctggacacgat
ttgttcggtatagcacaaacaggaacaggtaaaacagcagcttatttattaccacttctt
tataaggcaaaatatgctcaaggaaatgatccgagagtactgattttagtacctacaaga
gaattggcaattcaagtaggaaaagaagtcgaaaaattagcagtttatactggtttaaga
catgctgtagtttatggtggtattggccccaaaacgcagattgaagaagtagaaaaaggg
attgatttattagtaggtacacctggtagagtaatggatatttattctagaggtaaattg
aaaacgaagtcaattaaatatatggtacttgacgaagcggatagaattatggatatggga
ttcatgccacaaattcgtcagatgttggaaattattccaagaaaacgtcagaaccttttg
ttctcggcaacaatgccagatgtagttgttcgtttaagtgaagagttcttagaatttcct
cagagagttgaaattacaccgcaagctactaccgcagaaatggtagatcagtttgtgtat
aatgtacccaactttatgacgaaacttcatcttctttcttatttaatgaatacagatgct
tcattatcaagaattatggtatttgtacgtaagaaagaacaagccaatggcgtagctgct
ttcttacaaagacacactgaaggcgaggtaagagtaatccatgctaataagggtcagaat
gctcgaataaatagtattgatgattttaaagatggtgacatccgagttttagtagcaaca
gatgtagctgcaagaggtattgatgttagtatggtatctcacgtggttaactttgatgtt
ccagtgatgtatcatgattatgttcaccgtgtaggtagaacaggtagagcaaacaatacg
ggtgttgcatatactttctgtaatcctgcggagaaatatcatttattaaaaattgaagaa
gtaattaataaagagattcctgttttagagatgccagaaggagtagaagaacaagaagct
actcagcatgaagcacgtgacatggcgatggaaattgatcgtcagaaacgtaaagaagac
cctaactttaagggagcctttcatgaaaggaaaaagaataaagataaggtggataaaaac
cgtagaaataaaaataaagcttctatcgataagcagcgagcaagtggtaaagtaagtgct
tatatcacacaaggtaagtcgaagaagaaataa
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