Flammeovirga pectinis: EI427_12700
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Entry
EI427_12700 CDS
T05771
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fll
Flammeovirga pectinis
Pathway
fll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI427_12700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fll03019
]
EI427_12700
Enzymes [BR:
fll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI427_12700
Messenger RNA biogenesis [BR:
fll03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI427_12700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
ERCC3_RAD25_C
AAA_22
Drf_DAD
HP0268
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AZQ63064
UniProt:
A0A3Q9FRV7
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All DBs
Position
1:3159848..3161131
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AA seq
427 aa
AA seq
DB search
MTFESLGVMPSILEALETRGYTTPTPIQEKSIPFILEGRDLQGCAQTGTGKTAAFCIPII
QRLSQNPKKGNKIRTLILTPTRELALQIGESFSEYNENNNLKQLVIFGGVSQEKQVKKLK
QGVDVLIATPGRLLDLMQQKFISLSHLEIFVLDEADRMLDMGFIHDIKKILKVLPEKRQS
LFFSATMPDSIVQISNRILTNPKKVEVTPVSSTAETIDQFIYYVDKRNKKNLLLKVLEDE
AMDSILIFTRTKRGANHIAGTLSDKGIKAEAIHGNKSQTARQRALSNFKDKKIRVLVATD
IAARGIDISQLKFVINFEVSDTPETYVHRIGRSGRAGEEGVAYTFADGSELKDVKAIEKL
IGKRIPEVRDHSFPMQEKESDIAKSTAKKQKQGQRGKPKGAPKKSRNNSSGGGNGSGSNN
RSKARRR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaatcccttggcgtaatgccatctatccttgaagcacttgaaactcgtgga
tatacaacaccaactcctattcaagaaaaatctattccttttattttagaaggtcgtgat
ttacaaggatgtgcacaaacaggaacgggtaaaactgccgctttctgtatcccaattatt
cagcgtctttctcagaatcctaaaaagggaaataaaattagaactttaattttaactcct
actagagaattagctttacaaattggagaaagctttagtgagtataatgagaataataat
ttaaagcagcttgttatttttggtggtgtatctcaagaaaaacaagtaaaaaaattaaaa
caaggtgttgacgttctaatagctacccctggtcgtttattagatttaatgcaacaaaaa
tttatatcactgtcacatttagaaatttttgttctagatgaagctgacagaatgttagat
atgggttttatccatgacataaaaaaaatattgaaagttcttcctgaaaaaagacaatca
ttatttttctctgcaactatgccagatagtattgtacaaatctctaacaggattcttaca
aaccctaaaaaagtagaggttactccggtttcttcaactgcagaaactattgatcagttt
atttattatgttgataagcgtaataagaaaaatttactgcttaaagtgttagaagacgaa
gctatggattcaattctaatatttactcgtactaaaagaggtgcaaaccatattgctggt
actttaagtgataaaggaataaaagctgaagcaattcacggtaacaaatcgcagactgca
agacaaagagcgttatctaactttaaagacaaaaaaattagagtacttgtagctactgat
attgcagctagaggaatagatattagccaattaaaatttgtaatcaatttcgaggtttct
gatactccagaaacttatgtacatagaattggtagatctgggcgtgctggtgaagaaggc
gtagcttatacatttgcagatggttctgaacttaaagatgttaaggctatcgaaaaatta
attggtaaaagaataccagaagtaagagatcattcttttcctatgcaagaaaaagaaagt
gacattgctaaatctaccgccaagaaacaaaaacaaggtcaaagaggtaaaccaaaaggt
gctcctaagaaaagtagaaataattcttctggtggtggcaatggtagtggtagtaataat
agaagtaaagcaagaagaagataa
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