Flammeovirga pectinis: EI427_18360
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Entry
EI427_18360 CDS
T05771
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fll
Flammeovirga pectinis
Pathway
fll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI427_18360 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fll03019
]
EI427_18360 (recQ)
03400 DNA repair and recombination proteins [BR:
fll03400
]
EI427_18360 (recQ)
Enzymes [BR:
fll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EI427_18360 (recQ)
Messenger RNA biogenesis [BR:
fll03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI427_18360 (recQ)
DNA repair and recombination proteins [BR:
fll03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EI427_18360 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
HTH_40
ResIII
HTH_45
Helicase_Sgs1
Rhodanese
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AZQ64115
UniProt:
A0A3Q9FT92
LinkDB
All DBs
Position
1:4644747..4646888
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AA seq
713 aa
AA seq
DB search
MDISTAQHALKQYFGYDRFRPMQEDIIANVLSKQDTVVLMPTGGGKSICYQIPGIISHGT
AIVISPLIALMKDQVESLKANGVPAAFINSSQNYVEQREIEEDLIHERLKLLYISPEKLL
APQFLDFLCRLHISFIAIDEAHCISQWGHDFRPEYTQLASLRLRFPDISFIALTATADKA
TRNDIARQLNMKDPRMYISSFDRPNLSLRVEAGQKRIEKIIHFLRDRPNQSGIVYCLSRK
NTESLAKKLRAAGHNAMYYHAGMPAAERSRVQESFIKDDIPIICATIAFGMGIDKPNVRW
VIHYNLPKNLEGYYQEIGRAGRDSLPSDTLLFYTFADVMQLREMVGDSGQSQLQLSKLER
MQQYAETRTCRRRILLSYFGESLGKDCGNCDVCRNPPELFDGTVIAQKAMSAIIRSSREM
NKSLSAGMLIDLLRGSRRIDLVRAGFDQIKTYGAGKDISYDHWQLYLQQMLNLGLVEIAY
DQHNTFRVTETGKNILLGKNPVNFAKLSQFKATPSTKTPTKKVSAKEELFTTLFEALRVL
RKSIADKEGIPPYVVFSDVTIKDMAEKMPIAVNDMVKVSGVGEVKLKKYGNQFIGAIVRF
IITKSKEGFKIKGSSLLLTYELYQKGLGIHEIGQQRQLRDESIFNHLATLYEMGYTIDIF
QFITGEQLEAVAEAIRTIGSNQGVKPIFDFFNGELPYSCIYFGLAHFNRTVGV
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggatatatccactgctcaacatgcccttaagcaatactttgggtacgatcgattcaga
ccaatgcaagaagacattattgctaatgtcttatcaaaacaagatacggtagtattaatg
cctacaggtggtggtaaatctatctgttatcaaattcctgggattatttctcacggaaca
gctattgtaatttctccgttaattgcattaatgaaggatcaggttgaaagcttaaaagca
aatggtgttcctgctgcttttattaatagttctcaaaactatgttgaacaaagagagata
gaagaagaccttattcatgaacgcttaaaattattatatatatctcctgaaaaattattg
gctcctcagtttcttgattttttatgtagactacatattagttttattgccatagatgag
gcacactgtatctctcagtggggacatgactttagaccagaatacactcaattagcttca
ttaagactacgttttcctgatatctcatttattgcgcttacagctacagctgataaagca
acaaggaatgatatagctagacagttaaatatgaaggaccctagaatgtatatttcttct
tttgatagacccaacctaagcttaagagtagaggctggtcagaaaaggattgaaaaaatc
attcactttttaagagataggccaaatcaatctggtattgtatattgtctttctcgaaaa
aacacagagtctttagctaaaaagctaagagcagccggtcacaatgctatgtattaccat
gcaggaatgcctgcagctgaacgatctagggtacaagaaagttttattaaagatgacatt
cctattatttgtgctactatagcctttggtatgggaatcgataaacccaatgtacgttgg
gtaatacattataacctacctaaaaatttagaagggtattaccaagaaattggtagagca
gggagagatagcttaccatctgatactttattgttttacacttttgcagatgtaatgcaa
ctgcgtgagatggttggcgatagcggacaatctcaactacagctttccaaactggaacgt
atgcaacaatatgcagaaacacgtacttgtagaagacggattcttttaagttacttcgga
gaaagtttaggtaaagattgtggtaactgtgatgtttgtagaaatcctcctgaattattt
gatggtactgtgattgctcaaaaagctatgtctgctattattcgatcttcgcgcgagatg
aataaaagcctatctgcaggtatgctaattgacttattaagaggatctcgtagaattgac
ttagtacgtgccggttttgatcagattaaaacatacggagcaggtaaagatattagttat
gatcattggcaattgtaccttcagcaaatgcttaatttaggtttagtagaaatagcctac
gatcagcataatacttttagagttacagaaacaggtaagaatatccttttaggaaaaaat
cctgtaaactttgcaaagttatctcaatttaaagctactccatcaacaaaaacacctacc
aaaaaggtttctgcaaaagaagaattatttacaactcttttcgaagctttacgtgtttta
cgaaaatctattgcagataaagagggaatacctccttatgttgtttttagtgacgttacc
attaaagatatggcagaaaaaatgcctattgctgtaaatgatatggtgaaagtatctggt
gttggtgaagttaaattgaaaaaatatgggaaccagtttattggagctattgttaggttt
attatcactaaatctaaagaaggttttaaaataaaaggcagttctctcttgttaacgtat
gaattatatcaaaaaggacttggtattcatgagataggacagcaaaggcagttaagagat
gaaagtatctttaaccatcttgctactttatacgagatgggttatactattgatatcttt
cagtttattacaggagaacaactagaagctgtcgcagaggctattcgtactattggtagc
aatcaaggagttaagccaatttttgatttttttaatggagagctaccttatagttgtatt
tatttcggactcgcacattttaatcgaactgttggagtctaa
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