Flammeovirga sp. MY04: MY04_1113
Help
Entry
MY04_1113 CDS
T04442
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
flm
Flammeovirga sp. MY04
Brite
KEGG Orthology (KO) [BR:
flm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
flm03009
]
MY04_1113 (rlmD)
Enzymes [BR:
flm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MY04_1113 (rlmD)
Ribosome biogenesis [BR:
flm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MY04_1113 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
Methyltransf_25
Methyltransf_15
MTS
TRAM
PCMT
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
Methyltrans_SAM
FtsJ
Methyltransf_4
UPF0020
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
ANQ48490
LinkDB
All DBs
Position
1:1375162..1376571
Genome browser
AA seq
469 aa
AA seq
DB search
MARRKKNIVLENIEIIDIGAEGKAIAKTEDNMTVFVTGAVKGDICDLQVTKKRKAYMEAR
PINFHQYSDLRVDAFCEHFGLCGGCKWQMLDYKSQLHFKHKQVEDQLTRIGKIDLPEFNP
ILGSEKTKEYRNKMDFTFTSSRWLTKEEMETGGENIERRGVGLHLPGMWNRVLHLNDCYL
QNQPADKIRKSLYQFILDNDLTTFDHYEHTGLLRNLIIRTASTKDLMVMVQFYDNNEEQI
QLVMNHLKESFPEITSLLYVINQKRNDSYQDLDFKVFNGKPYIEEEMEGLRFRVGPKSFY
QTNSEQAYTLYKVARDFAKLTGEERVYDLYTGTGTIAQFVSRKAKEVIGIEYVEDAIKDA
NKNAELNGIENCKFFAGDMKDILTKSFIKKHGNPDVIITDPPRAGMHEDVINQILEVEPT
RIVYVSCNPATQARDLALLDTKYKVVEVTPVDMFPQTYHVENVVALELK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaagaaagaaaaatatagttctagaaaatattgaaatcatcgatattggtgct
gaaggaaaagcaatagcaaaaacagaagataatatgactgtttttgtaacaggtgctgtg
aaaggtgatatttgtgacttgcaagtgactaaaaaacgcaaggcatatatggaagcgaga
cctatcaatttccatcaatattctgatctaagagtagatgctttttgtgagcattttgga
ctttgcggtggttgtaaatggcaaatgcttgattataaatcacaattgcatttcaaacac
aagcaagttgaggatcaattgactagaattggtaagatagatcttcctgaattcaatccg
attttaggttctgaaaagaccaaagaatatagaaataaaatggatttcacatttacttcg
agtcgttggttaacgaaagaagaaatggaaacaggtggagaaaacattgaaagaagaggt
gtaggacttcacttgccaggaatgtggaatagagttttacatttgaacgattgttatctt
caaaatcagccagctgataaaatcagaaagtctctatatcaatttattcttgataatgat
ttaacaacatttgatcattatgagcatactggtttattgagaaacttaatcattagaacg
gcatcaacaaaagacctaatggtaatggtgcagttttatgataataatgaagaacaaatt
caattggtaatgaatcatcttaaagaatcattccctgagattacttctttattatacgta
attaatcaaaagagaaacgatagttaccaagacttagattttaaagttttcaatggaaaa
ccttatatagaggaagaaatggaaggtttaagatttagagtaggtccaaaatctttctac
caaactaactctgaacaagcatatactttatacaaagtagctcgcgatttcgctaagctt
acaggcgaggaaagagtatatgatttatatactggtacaggtacaattgcacaatttgtt
tctagaaaggcaaaagaagtaattggtattgagtatgtagaagatgcaattaaggatgct
aataagaatgcagaattaaatggtattgaaaattgtaaattctttgctggtgatatgaaa
gatattctaacaaaatctttcattaaaaagcatggtaatccagatgtgattattactgac
cctccaagagcaggtatgcacgaagatgtaattaatcagattttggaagtggagccgaca
agaattgtatatgtaagctgtaatccggctacgcaagcaagagatttggctttactagat
actaaatataaggttgttgaggtaactcctgtagatatgttccctcaaacttatcatgtc
gaaaatgtagtggcattggaattaaaataa
DBGET
integrated database retrieval system
