Flammeovirga sp. MY04: MY04_1553
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Entry
MY04_1553 CDS
T04442
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
flm
Flammeovirga sp. MY04
Pathway
flm03030
DNA replication
flm03430
Mismatch repair
flm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MY04_1553
03430 Mismatch repair
MY04_1553
03440 Homologous recombination
MY04_1553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flm03032
]
MY04_1553
03400 DNA repair and recombination proteins [BR:
flm03400
]
MY04_1553
Enzymes [BR:
flm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MY04_1553
DNA replication proteins [BR:
flm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MY04_1553
DNA repair and recombination proteins [BR:
flm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MY04_1553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
GIY_YIG_2
DNA_pol_A_exo1
Rv2179c-like
DEDDh_C
DUF7508
Motif
Other DBs
NCBI-ProteinID:
ANQ48929
LinkDB
All DBs
Position
1:complement(1936867..1938243)
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AA seq
458 aa
AA seq
DB search
MKYAVIDLETTGGSVAQGGKIIEIAIIVLENGVEIDRFESFVNPEMNIPPFIQQLTGIKN
ATVKDAPKFFEIAKKVVEVTENCTFVAHNAEFDYNFVKDEFKLLGYKYLRNSLCTVETSR
ILLPGKKSYSLGKLCDEIGIPHNKRHRAIGDTEATAKLFQLLLEQENAEQVIEEMTVYDV
YSSKKHYMIKKEVIDALTDETGVYYLYNEEEELIYIGKSKNIRKRILQHLSNKSTPRAIR
MAEMVRDVKTTITGSELIALLLESDEIKKHQPRFNRAQRRTKQFFGIYKYIDDNNYINFR
IAPLSEGDYPVTTTFSRKEAERILDRMIEKNNLCQKLCGIDHSQNSCFRYQLKNCKGACC
GEETAESYNVRANEAAMRFSYGAPNVFLIDKGREDNERGVIQIENGIYKGFGYVKKSNNY
NPDKLKKVITKYKDNADVNKIIRGMLRKKKGIERKVFY
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacgctgtaattgatcttgaaactacaggaggttccgtcgcccaaggagggaag
attatcgaaatcgccataattgtcttagaaaatggtgttgaaattgaccgttttgagtct
tttgtaaatccagagatgaatattcctccatttattcaacaattgacaggaattaaaaat
gccactgtaaaggatgctcccaagttttttgaaatcgccaaaaaagttgtggaggtaact
gaaaattgtaccttcgtggcacataacgcagagtttgattacaattttgtaaaagatgag
tttaagttgttgggttacaaatatctaagaaactcattatgcaccgtagaaacatcccga
attttattgcctggtaaaaaatcatatagtttgggtaaattatgtgatgaaatcggcatt
cctcataataaacgtcatcgtgctattggtgatactgaagcaactgctaaactttttcaa
ttactcctagaacaagaaaatgcagaacaggttattgaagaaatgactgtttatgatgta
tatagttctaaaaagcattatatgattaaaaaagaggtcatagatgctttaactgatgag
actggcgtttattatctctataatgaggaagaggaactgatttatatcggtaaatcaaag
aatatcagaaaaaggatattgcaacatttatcgaataagtctactcctagagccataaga
atggcggaaatggttcgtgatgtaaaaacaacaattacaggtagcgaactaatagcactt
cttttggaatctgacgaaattaaaaaacatcaacctagatttaatagagcacaaagaaga
acaaaacagttctttggtatctataaatatattgatgataataattatatcaactttaga
attgcaccactttcagaaggtgattatcctgtaactactactttttcgagaaaagaagct
gaaaggatattagataggatgatagagaaaaacaatctatgtcaaaagctttgtggtatc
gatcatagccaaaattcttgttttagatatcaattgaaaaattgtaaaggggcctgttgt
ggtgaagaaactgcagagtcatacaatgtcagagcgaatgaagcagctatgaggtttagt
tatggtgctccaaatgttttcttgattgataaaggtagagaagataacgagagaggtgtc
attcagattgaaaatggtatatataagggttttggttatgtaaagaaaagcaataactat
aatccagataagttgaaaaaagtaatcactaaatataaagacaatgccgatgtgaataaa
attattcgaggcatgttgagaaagaaaaaaggaattgagagaaaagttttttattaa
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