Flammeovirga sp. MY04: MY04_2072
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Entry
MY04_2072 CDS
T04442
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
flm
Flammeovirga sp. MY04
Pathway
flm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MY04_2072 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flm03019
]
MY04_2072 (rny)
Messenger RNA biogenesis [BR:
flm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MY04_2072 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
AAA_15
Motif
Other DBs
NCBI-ProteinID:
ANQ49446
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Position
1:2569419..2571026
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AA seq
535 aa
AA seq
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METTLIIVITAIAGIGIGTALGRYMLAKVLKGLETEARDKAQHIVEEAKKDSERIKRDKL
IESKEKFLKMKQDFDSETAKRRNQLNVNENKLKQFENRLKQQESKQKQKEASIAKQLESF
KMKDKEMENRFEELAIQKELTFKAKEEAEQLRLKQVEQLEKVANLKAEEAREQLIEALKD
EARTKASMHIKNIMEEAKMTATKEARKTVITTIQRTAAEQAIENCVSVFNLESDELKGKI
IGREGRNIRALEASTGVEIIVDDTPEAIIISGFDPVRREIARVSLHRLVADGRIHPARIE
EVVAKTKKNIEDEIIEIGERTVIDLGIHGLHPELIKLVGRMRFRSSYGQNLLQHSREVAN
LASTLASELGLNAKVAKRAGLLHDIGKVWPEEPEVPHAILGMNLAKKYGESAEVCNAVGA
HHDEIEMTTLISPIIQACDAISGSRPGARREMMESYIQRLKELEGLAMGFKGVHKCYAIQ
AGRELRVMVDAEKVPDAEAGQLSFDIANKIETEMQYPGQIKVTVIRETRSVHFAK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaaccctaattatagttatcaccgcaattgctggtatcggaatcggtactgca
ttaggtagatatatgcttgccaaagtgttgaagggacttgagacagaagcaagagacaag
gcgcagcatatcgtagaggaggctaagaaagactcagagagaattaaaagagacaagttg
atcgagtcgaaggagaagtttttgaaaatgaaacaagattttgattcagaaacagcgaag
agaagaaatcaacttaacgtaaacgaaaacaagctgaagcagtttgaaaaccgtttaaaa
caacaagaatctaagcagaagcaaaaggaagcaagtattgccaaacaattggagtctttt
aaaatgaaagacaaagaaatggaaaaccgtttcgaagaattggctattcaaaaagaactt
actttcaaagcaaaagaagaagctgaacaacttcgtttaaagcaagtggagcaacttgaa
aaagtagcgaaccttaaagcagaagaagctcgtgaacaattgatcgaagctttaaaagac
gaagcaagaacaaaagcctctatgcatattaagaatatcatggaggaggcgaaaatgact
gcgacgaaagaagctagaaaaacagtaatcactactattcaacgtactgcggctgaacaa
gcaattgagaactgtgtatctgtcttcaacctagaaagtgacgagctgaaaggtaaaatc
atcggtagagaaggtcgtaacattagagctttagaagctagtactggcgttgagattatc
gttgatgatactcctgaagcgatcattatctctggcttcgatccggtaagacgagaaatc
gcaagagtttcacttcacagattggtagcagatggtagaattcaccctgctcgtatcgaa
gaagtggtagcgaagacgaagaagaacatcgaagacgagatcatcgaaattggtgaaaga
actgtgatcgatttaggtatccatggtttacaccctgagttgatcaagctagtaggtaga
atgaggttccgttcttcttatggtcagaacttgttacaacactctagagaagtggctaac
cttgcaagcacattggcttctgaacttggcttaaatgctaaagtagcaaaacgtgctggt
ttacttcacgatattggtaaagtttggccagaagagccagaagtacctcacgcaatctta
ggtatgaatttagctaagaaatatggtgaatctgctgaagtatgtaacgcagttggtgct
caccacgatgagattgaaatgacaacattaatttcacctatcatccaagcatgtgatgca
atctcaggttctagaccgggtgctcgtcgtgaaatgatggaatcgtacatccaacgtctg
aaagaactagaaggtttagctatgggcttcaaaggggtgcataagtgttatgcaatccaa
gcgggtagagaacttcgtgtaatggtagacgctgagaaagtgccagatgcagaagcagga
caattatcatttgatattgccaataagatcgaaactgaaatgcaataccctggacagatt
aaagtgacggtaatccgtgaaactagatcggttcactttgctaagtaa
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