Flammeovirga sp. MY04: MY04_2395
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Entry
MY04_2395 CDS
T04442
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flm
Flammeovirga sp. MY04
Pathway
flm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MY04_2395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flm03019
]
MY04_2395
03009 Ribosome biogenesis [BR:
flm03009
]
MY04_2395
Enzymes [BR:
flm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MY04_2395
Messenger RNA biogenesis [BR:
flm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MY04_2395
Ribosome biogenesis [BR:
flm03009
]
Prokaryotic type
rRNA helicases
MY04_2395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ANQ49767
LinkDB
All DBs
Position
1:complement(2973311..2975125)
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AA seq
604 aa
AA seq
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MAKFSELGLKQELLDAVSELGFEEPTPIQGEVIPTLLTEDTDLVGLAQTGTGKTAAFGLP
LLHRVDVSDKRTQALVLCPVRELGLQIARDLENFSKKIPGLKVVAVYGGAPIDQQIRQIK
RGAHVIVATPGRMDDVLKRGKADITQVETVVLDEADEMLKMGFKDELDSILENTPEEKNV
WLFSATMPREVARIASNYMTEPLEVTVGTKNTGNKNVKHYCYMVRANDRYEALKRVVDYN
PNIYGIVFCRTRQETKDVAEKLMIDGYNADALHGDLSQAQRDYVMGKFRQRSLQILVATD
VAARGLDVNDLSHVINYNLPDDIETYNHRSGRTGRAGKEGVSIAIIHMREKHRLRAIERV
LKQSFIMDPVPTGPQICERQLFHLVDRIHDVEMEEDEIEQYLPKVYEKLEDLSREEIINR
FVALEFNRFLDYYRGARDLNVPDRRDNSNKKERGENNNRRNAESGFTRFFINLGKRDEVR
PKDLIDLINKGVRGERIEIGRIDLKQNFSFFELKEGREDEVTKGMGKLDFNGRKIDVEVS
NAPDRGGRRGGGGGDRRRRPFGGGGDRGGDRRGGGYRGGGNRGGGDRDRRSGGGGDRRRR
RPSN
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatttagcgaattagggcttaagcaagagctgttagatgcagtttctgaactt
ggtttcgaagaaccaacaccaatccaaggagaagttattccaactctattaacagaagac
actgatttagtgggattggcacaaacaggaacaggtaaaacagcagctttcggtttacca
cttttacatcgagtagatgtttcagataaaagaactcaagcacttgtattgtgtcctgta
agagagctaggattacaaattgcaagagacttagaaaacttttccaaaaaaatcccaggt
cttaaagtagtagcagtatatggtggtgctcctatcgaccaacaaatccgtcaaatcaaa
agaggtgctcacgtaattgtagccactccaggtagaatggacgacgtcttaaaaagaggt
aaagcagatatcacgcaagtggaaactgttgttcttgatgaggcagatgaaatgttgaaa
atgggattcaaagatgaattggattcaattttggaaaatacaccagaagagaaaaacgtt
tggttattctcagcaacaatgccaagagaagtggcaagaattgcttctaactacatgaca
gaacctttagaggtgactgtaggtactaagaacactggtaacaaaaatgtaaagcattac
tgctacatggttcgtgcaaacgatagatacgaagcattaaaacgtgtagtagattacaat
cctaatatttatggtatcgttttctgtagaacaagacaggaaactaaagatgtagccgag
aaattgatgatcgacggttacaacgcagatgccttacacggtgacttatctcaagctcag
cgtgattacgtgatgggtaaattccgtcaacgttcacttcaaattctagtagcaacagac
gttgccgctcgtggtttggacgtaaacgatttatctcatgtaattaactacaatcttcca
gacgatatcgaaacatacaatcaccgttcaggccgtacaggtagagcaggtaaagaaggt
gtttctatcgctatcatccacatgagagaaaagcatagacttagagccatcgaaagagtg
cttaagcaaagctttatcatggatccagtgccaacaggccctcaaatttgtgagcgtcag
ttgttccacttggtagatagaattcacgatgtggagatggaagaggatgaaatcgaacaa
taccttcctaaagtttacgagaaattagaagacttaagcagagaagaaatcatcaacaga
tttgttgctcttgagtttaaccgtttcttagattattacagaggtgcaagagatcttaat
gtaccagatcgtagagataacagtaataagaaagaaagaggggagaacaataatagaaga
aatgcagaaagtggtttcactcgtttctttattaaccttggtaagcgtgatgaggtaaga
ccaaaagatttgatcgacctaatcaacaaaggtgttagaggagagcgtatcgaaattgga
cgtatcgacttgaaacaaaacttctctttcttcgaattaaaagaaggacgtgaggatgaa
gtaactaaaggaatgggtaaattagatttcaacggaagaaaaattgatgttgaagtatct
aatgctcctgatcgtggtggccgcagaggcggtggcggaggagaccgtcgtcgtagacca
ttcggtggcggaggagaccgtggtggtgaccgtagaggcggtggctacagaggcggtgga
aaccgtggtggtggagatcgcgatcgtcgtagtggcggtggtggtgaccgtagaagaaga
agaccaagcaactaa
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