Flammeovirga sp. MY04: MY04_3018
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Entry
MY04_3018 CDS
T04442
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
flm
Flammeovirga sp. MY04
Pathway
flm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MY04_3018 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flm03019
]
MY04_3018 (pnp)
03016 Transfer RNA biogenesis [BR:
flm03016
]
MY04_3018 (pnp)
Enzymes [BR:
flm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MY04_3018 (pnp)
Messenger RNA biogenesis [BR:
flm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MY04_3018 (pnp)
Transfer RNA biogenesis [BR:
flm03016
]
Prokaryotic type
tRNA degradation factors
MY04_3018 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ANQ50386
LinkDB
All DBs
Position
1:complement(3786929..3789205)
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AA seq
758 aa
AA seq
DB search
MFENVIKKTVALPDGREISLETGRMARQADGSIVLRMGNTMLLATVVSNPDKREGADFLP
LSVDYQEKFASAGKIPGGFLKREGRLSDREILISRLVDRAIRPLFPSDYYHDTQIMISMI
SADQEALPDALVAFAASAALSITDIPFDGPISEVRVIKDVNGEYIVNPTPAQMEGCTLDL
MIGATAENITMVEGEMQEVGEDEMIEAIKVGHEVIKTQCAIQVELRAAAGVEGFREFEGD
VEDEELKEEVFSALYDKLYAVAAQGIKGKSERKAAFTEVKKAYLEALPEGEETEEKLPLI
KRYIAKCEKKASRDLVLNTKNRLDGRDLEEVRPIVPEVDVLPSAHGSALFTRGETQSLTT
VTLGTKMDEQMLDSAMTSGTSKFILHYNFPGFSTGEVRPNRGPGRREVGHGNLGHRALER
VLPPEDENPYTIRIVSDILESNGSSSMATVCAGSLALMDAGVNITGTVSGIAMGMISEND
PETGELKYAILSDILGDEDHLGDMDFKVTGTEKGITACQMDIKVDGLPYEVLKQALEQAN
RGRAHIRGVMDEVIKESRADLKPHAPRSAVMMIPQDLIGAVIGPGGKVIQEIQKDTGATI
VIEEVENQGKVSFFATDKEAMDGAIGRVKAIVAQPEVGETYTGKVKSLQPFGAFIEFMPG
KEGLLHISEIAWERTDSVEGILNVGETIDVKLLEVDPKTGKFKLSRKALLPMPEGYTPPP
PRERRSFDRGGDRGGRRDDRRGGDRGGRRDDRGGYNRR
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaacgtgattaaaaaaacagttgccctacctgacggtcgtgagatcagttta
gagaccggcagaatggcaagacaagcagatggttctattgtcttgagaatgggaaacaca
atgttattggcaactgtagtttctaacccagacaaacgagaaggagcagactttttgcca
ctttcagttgattaccaagaaaaatttgcctctgcaggtaaaatcccaggtggtttcttg
aaaagagaaggtcgtttaagcgatagagaaattttgatctctcgtttagttgaccgtgca
attcgtccattattcccatcagattactatcatgatacgcaaatcatgatttctatgatc
tctgcagatcaagaagctttaccagatgcattagtagcatttgcagcatctgcagcatta
tcgatcacagatattccttttgatggacctatctctgaggtaagagtaatcaaagacgta
aacggtgaatacatcgtaaaccctacaccagctcaaatggaaggatgtacactagattta
atgatcggtgctacagctgaaaacatcacaatggtggaaggtgaaatgcaagaagtgggt
gaggacgaaatgatcgaagcaattaaagtaggtcatgaagttatcaaaactcaatgtgca
attcaagtagaattaagagcagcagcaggcgttgaaggattcagagaattcgaaggcgac
gtagaagacgaagaattgaaagaagaagttttctctgctttatatgataaattgtatgca
gtagcagctcaaggtatcaaaggtaaatctgagcgtaaagccgctttcactgaagtgaaa
aaagcgtacttagaagctttacctgaaggtgaagaaactgaagagaagctaccgctaatc
aaaagatacattgctaaatgtgagaagaaagcatctcgtgatttagtattgaatacgaaa
aaccgtttagacggtcgtgatttagaagaagtaagaccaatcgttccagaagtagacgtt
ctaccttcggcacacggttctgctttatttactcgtggtgaaactcaatcactaacaact
gtaacgcttggtactaaaatggacgagcaaatgttggatagtgcgatgacttcaggtact
agtaaatttatccttcactacaacttccctggtttctcaactggtgaggtaagaccaaac
agaggtcctggacgtagagaagtaggtcacggtaacttaggtcacagagccttggaaaga
gttcttcctccagaagacgaaaatccatatactattcgtatcgtttctgatattcttgaa
tcaaacggttcgtcttcaatggcaacagtttgtgctggttcattagcactaatggatgca
ggtgtgaatatcacaggtacagtttctggtatcgcaatgggtatgatttctgaaaatgac
cctgaaacaggtgagttgaagtatgctatcctttctgatatcttaggagacgaagatcac
ttaggtgatatggactttaaagtaacgggtactgaaaaaggtattacggcttgtcaaatg
gatattaaagttgacggtcttccttacgaagtattaaaacaagctttagagcaagcaaat
agaggtagagcacacattcgtggcgtaatggatgaggtaatcaaagaatctagagcagat
cttaaacctcacgctcctcgtagtgctgtaatgatgatccctcaagacttaatcggtgct
gtaattggaccaggtggtaaagtgatccaagagatccaaaaagacactggtgctactatc
gttatcgaagaagtagagaaccaaggtaaagtatctttctttgctactgataaagaagca
atggacggtgcaattggtagagtaaaagctatcgttgctcagccggaagttggagagact
tacactggtaaagtgaaatctttacaacctttcggtgcgtttatcgagtttatgccaggt
aaagaaggtttattacatatctctgaaattgcttgggaaagaacagatagcgttgaaggt
atcttgaacgtaggtgagacaattgatgttaaactattagaggtcgatcctaagacaggt
aaattcaaattatctcgtaaggcacttcttccaatgccagaaggttatactcctcctcct
ccacgtgagagaagaagctttgatcgcggtggcgaccgaggtggcagaagagatgatcgt
cgtggtggtgaccgtggcggtagaagagacgaccgcggaggttacaatagaagataa
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