Flammeovirga sp. MY04: MY04_3397
Help
Entry
MY04_3397 CDS
T04442
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
flm
Flammeovirga sp. MY04
Brite
KEGG Orthology (KO) [BR:
flm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flm03019
]
MY04_3397
03009 Ribosome biogenesis [BR:
flm03009
]
MY04_3397
Messenger RNA biogenesis [BR:
flm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MY04_3397
Ribosome biogenesis [BR:
flm03009
]
Prokaryotic type
rRNA processing factors
MY04_3397
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
DUF4829
Diphthamide_syn
C2185-like_N
Motif
Other DBs
NCBI-ProteinID:
ANQ50756
LinkDB
All DBs
Position
1:4302201..4303760
Genome browser
AA seq
519 aa
AA seq
DB search
MSNELVINSTQEGSRIALMRDKGLVELHYDNDETKFQVGDIYLGVVRKVVPGLNAAFIDI
GYDKDAFLHYLDLGPKVRSLLKYIKLAQGKHHKHVSENLKQFRLEPEIDKLGKINEVLKQ
NQKIMVQVVKEPISTKGPRLSCELSLAGRYLVLVPFSNTVNISKKITDASERRRLLKLVN
SIKPENFGVIIRTVAEGQEAPELNNDLRDLVTKWGEGVEKLKVAKPREKVIGEMNRATSM
LRDILNESFDSITVDDKDVYDEIRRYIQQIQPDKAGIVKHYTGKTKLFEHTGIEKQLKTL
FGQTVSLGSGGYLVIEHTEALHVIDVNSGNKSNAENNQEATAFNVNLEAATEIARQLRLR
DMGGIIVIDFIDMKKAEHKQKLYQHMKQEMKADRSKHTVLPLSKFGLMQITRQRVRPELS
IVTKEKCPTCNGTGKITASIAIADQVEAEVMYLLEKQNGQKLKLGVHPYLYSYFTGGFPS
RRMKWFFNHFKWIKIFEDSSLALSEYKFFDHHDEEISLK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaatgaactagttatcaattcaacgcaagagggaagtagaattgcccttatgcga
gataaaggtctggtagaacttcattatgacaatgatgaaacaaaatttcaagtaggagat
atctatcttggagtagtaagaaaagtagtacctggcttaaatgctgcatttattgacatt
gggtatgataaagatgcttttcttcattacttggatttaggtccaaaagtgagatcccta
ttgaaatacatcaagttggcacaaggaaaacatcataagcatgtgagtgaaaacttgaag
cagtttcgtttagaaccagaaattgacaagctcggaaaaatcaacgaagtactgaaacaa
aatcaaaagattatggtacaagttgtaaaagagccaatttctacaaaaggtcctagattg
tcatgtgaactatcgttggcaggtagatatttagttttagttccatttagtaacacagta
aacatatccaaaaaaattactgatgcgagtgaaagaagaagacttcttaaacttgtaaat
tctattaaacccgaaaacttcggtgtaattattagaacagttgctgaaggacaagaagca
cccgaacttaataatgaccttagagatttggttactaaatggggagaaggtgtagaaaaa
ctgaaagtcgctaagccacgcgaaaaggtcatcggagaaatgaatcgtgccacttctatg
ttaagagatattcttaacgagtcgttcgacagtattactgtagacgataaagatgtttac
gatgaaattcgaagatacatccaacaaattcaaccagacaaagccggaattgttaaacac
tataccggaaagaccaagctttttgaacacacaggtatcgagaagcaactaaaaacactc
tttggtcaaactgttagcttaggaagtggagggtatttggtaatcgaacataccgaagca
ctacatgttattgatgttaacagtggtaataagtcgaatgcagagaataaccaagaggct
actgcattcaacgtgaacttagaagcggctaccgaaatcgctcgtcaattacgattacgt
gatatgggtggtatcattgtcattgacttcatagatatgaagaaggctgaacacaagcag
aagttgtatcagcatatgaagcaagaaatgaaggcggaccgttcgaaacatacagttcta
ccgttgagtaaatttggcttgatgcaaatcacgagacaacgtgttaggccagaattaagt
attgtaacgaaagagaaatgtccaacgtgtaacggtactggaaaaattacagcatctatc
gcaattgctgatcaagttgaagcagaggtgatgtatttattagagaaacagaatggtcaa
aaattaaaattaggcgttcacccgtatctctattcctactttactggaggattcccttct
cgaagaatgaagtggttctttaatcatttcaaatggatcaaaatttttgaggattcttct
ttagcattatccgaatataaattctttgatcatcatgatgaagaaatttctttaaaatga
DBGET
integrated database retrieval system
