Flammeovirga sp. MY04: MY04_4991
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Entry
MY04_4991 CDS
T04442
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
flm
Flammeovirga sp. MY04
Brite
KEGG Orthology (KO) [BR:
flm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flm03019
]
MY04_4991 (hrpB)
Enzymes [BR:
flm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MY04_4991 (hrpB)
Messenger RNA biogenesis [BR:
flm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MY04_4991 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_19
HA2_C
AlkA_N
nSTAND3
Flavi_DEAD
AAA_11
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ANQ52326
LinkDB
All DBs
Position
2:1300442..1302925
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AA seq
827 aa
AA seq
DB search
MAFPYHQTNLPVKDIIPEVHQVLENQNTLILKAPPGAGKSTLLPLTLLGQKWLGDQKILM
LEPRRLAAKSIAERMSDMLGEKVGNTVGYRVRFDTKISDKTKIEVVTEGILTRMIHHDNT
LENVGIIIFDEFHERSIHADVAMALSREIQKVIREDLRILVMSATMDMPQLSLMLDQAPI
LESKGKMYPVDINYVGDIDRYLIPELTAKTVIDAAKKHDGDILCFLPGQGEIRKCEEILR
GALREFSIHPLYGQLPFHVQQKAIFPHPQGKRKVVLATNIAETSLTIEGVKIVVDSGFTR
TQVFDANSGLSKLTTEQISEDAADQRSGRAGRLSEGVCYRLWSLSTHQKLDKERTPEIEK
ADLTSLALDMAEWGITSPTSLEWVTPPPNGHFLQAMDTLEQLEAFEDGLLTDHGKEIHKL
PCHPRIAHMLLYAEEEDLLALACDLAAILEERDPLPNNSGIDINLRIEALRRFRTDSGKN
KRFRNIEKVANQYRRLFDIDADNSGVDDFETGVLLAHAYPERIACSKPGNNAQFQLANGK
IAMAGHKDDLAYEQWLAVAHIDAREGMGKIFMASPLDPKDLATMVKEKEMIEWDTDDGGL
IATKDLRIGSIVLKSTPIQSISEEAKLNAITDAIKKEGRQLLDFNEEVTQWQARIASLRK
WNPKEEWPDCSTPYLLLNNKQWITPYLKDVKKPQDLKKLKLIDILHHSLEWDKQEVLNTL
APIKIKVPSGSQIKLKYSDNGAPPILAVRLQECFGLAETPSVNNCKQNVLMHLLSPGFKP
VQITSDLKSFWDNTYFEVKKELKRRYPKHAWPEKPWEEEAVRGVKRK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtggcatttccatatcatcaaaccaatcttccggtaaaagatattatacctgaagttcat
caagttttagaaaatcaaaatacgcttatcctaaaagcacctccgggtgcaggtaaaagt
actttattgccccttactttattgggacaaaaatggctcggagatcagaaaatcttaatg
cttgaaccaaggcgtttagcagcaaaatcaattgctgaaagaatgtctgatatgttgggt
gaaaaagttggaaataccgtaggttatagagtacgattcgataccaaaatatctgataag
acaaagatagaagtggttactgagggtattttaacaagaatgattcatcatgacaatact
ttagagaatgtcggaatcataatttttgatgaatttcatgaacgcagtattcatgcagat
gttgccatggcgctttctagagaaatacagaaagtgattagagaagatcttaggatcttg
gtcatgtctgccactatggatatgcctcaattatcactaatgctcgatcaggctccaata
cttgaaagtaaaggaaaaatgtatcctgtagacattaactatgtgggtgatattgatcgt
tatctcatacctgaattaactgcaaaaacggtgattgatgcagcaaaaaaacatgatggc
gatattctttgttttttacctggacaaggtgagatcagaaaatgtgaggagatattaagg
ggtgcacttcgtgagttttcaattcaccctctttacggtcaactaccatttcatgttcag
caaaaggctatttttccgcaccctcaagggaaaagaaaagtagttttagctactaacatt
gcagaaaccagtttaaccattgaaggagtgaaaattgtagtcgattctggctttacaaga
actcaagtttttgatgccaactcagggctttcaaaattaactacagaacaaatttctgaa
gatgccgcagatcaaagaagtggtcgtgctggacgtctttcagagggtgtttgttatcga
ctttggagcttatctactcatcaaaagttagataaagaacgtactcctgaaatagaaaaa
gctgatttaacatcactggccttagatatggcggaatggggcattacttcacctacttca
ttagaatgggttactcctccaccaaacggtcattttctacaagccatggacaccttggaa
caattagaggcttttgaagatggactattaaccgatcatggtaaggagatacacaaatta
ccttgtcacccaaggattgcgcatatgttattgtatgctgaagaggaagatcttcttgct
ttagcttgtgatttagcagctattttagaagaaagagatcctcttcctaataactctgga
attgacattaatctgagaatagaagcattaaggcgatttagaactgatagcggaaagaac
aaacgctttaggaatatagaaaaagtagccaatcaataccgcaggctatttgatattgat
gctgacaactcaggtgtggatgattttgaaacaggtgttttattggctcatgcctaccca
gaaagaattgcttgttctaaacctggaaataatgcacaattccaacttgcgaatggtaaa
attgccatggcgggtcataaagacgatttagcctacgagcaatggttggcagtggcacat
attgacgcccgtgagggtatgggaaaaatctttatggcatctcctttagatccaaaggat
ttagccactatggttaaagaaaaagaaatgatcgaatgggatactgatgatggaggactt
attgccacaaaagacttacgaattggtagcatagtgcttaaaagtacgcctatccaatcc
atttctgaggaagccaaattaaatgcaattactgatgccataaaaaaagaaggccgtcag
cttctagatttcaatgaggaagtcactcaatggcaagccaggattgctagtttaagaaaa
tggaatcctaaagaggagtggccagactgttctaccccatacctattgttaaataacaaa
caatggattaccccttatttaaaagacgtaaaaaaacctcaagatttaaagaaattaaag
ctgattgatattctacatcatagtttagagtgggataaacaagaagtattaaatacactt
gctccaataaaaataaaagtaccaagtggtagtcagataaaactaaaatattctgataat
ggagcacctcctattttggccgtacgcttacaagaatgttttggtttagcagaaacacct
tctgtaaacaactgtaaacaaaatgttttgatgcatttattgtctccagggtttaaaccg
gtacagattacatctgacttaaaaagcttctgggataacacctattttgaggtaaaaaag
gaactaaaaagaagatatcctaagcatgcatggccagaaaaaccatgggaagaagaagcc
gtaagaggagttaaaagaaaataa
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