Filimonas lacunae: FLA_0324
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Entry
FLA_0324 CDS
T05172
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fln
Filimonas lacunae
Pathway
fln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FLA_0324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fln03019
]
FLA_0324
Enzymes [BR:
fln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FLA_0324
Messenger RNA biogenesis [BR:
fln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FLA_0324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAV04336
UniProt:
A0A173M9X3
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All DBs
Position
386393..387535
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AA seq
380 aa
AA seq
DB search
MSFSTLGLSAPLLQAVIDQQYSKPSPVQEQAIPALLRGKDVLGIARTGSGKTAGYVLPVL
QLCQRRVEKKDRHVRVLVMVSTRELAVQVGEVFNIFSVHLPYKIKTMAVYGGVSINPQMM
SLHGTDVLVATPGRLLDLIDSRAIHLSEIEILVLDEADKMLNLGFKEEMDKIFALLPSKR
QNALFTATASDDIQDMQKHLLNRPVTIEIVEEEQDIDLIEQQAYNVTEARKGPLLRYLIK
KEDMQQVLVFTSAVRTADNLTGKLIKNGIHAASLHGHLSQTARLETLQRFKEGKLRVLVA
SDLASRGIDIQQLPVVINYELPRSPKDYVHRIGRTGRAGASGKAISLICPEDQHHFGIIQ
KKMGKKVAILESDDINLQGF
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtcattctctaccctggggttatccgcaccattattacaagcggtcattgatcagcaa
tacagcaagccttctcctgtgcaggagcaggcgattccggcactgttgagaggaaaggat
gtgctgggtattgctcgcacggggtcgggtaaaacggcagggtatgtattacctgtgttg
cagctatgtcagcgtagggtggaaaagaaagaccgtcatgtgcgggttctggtaatggtg
tctacgcgtgagttggcagtacaggtgggcgaagtatttaacatctttagtgtgcattta
ccttataagatcaaaaccatggcggtgtatgggggggtgtctattaatccgcagatgatg
tcattacatggcacagatgtgttagtagctacacctggccgtttgctggatttgatcgat
tccagggcgatacatttgtcggagatagaaatactggtgctggacgaggcggataagatg
ttgaacctgggttttaaagaggaaatggacaagatttttgccttattgccttccaaacgt
cagaatgcactatttacagctacagccagcgacgatatacaggatatgcaaaagcatttg
ctgaacaggcctgtaaccattgaaatagtagaagaagagcaagatatcgacctgatagaa
cagcaggcttacaacgtaacagaagctcgtaaagggccattgttgcgctacctgattaag
aaggaagatatgcagcaggtgctggtgtttacatctgcggtaagaacggctgataacctc
actggcaagctgattaaaaatggcattcatgccgcttctttacacgggcatttaagccaa
acagcccgcctggaaaccctgcaacgctttaaagaagggaagctgcgcgtgctggtggca
tccgatctggcttccaggggtattgatattcaacagttgcctgtggtaatcaattatgaa
ttgccgcgctcgcccaaagattatgtacaccgcataggccgtaccggcagggcaggagcc
agcggcaaggctatttcgctgatttgtccggaagatcagcatcattttggcattattcag
aaaaagatgggaaaaaaggtagctatactcgaaagcgacgatatcaacctgcaagggttt
taa
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