Filimonas lacunae: FLA_0348
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Entry
FLA_0348 CDS
T05172
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
fln
Filimonas lacunae
Pathway
fln02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FLA_0348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fln03021
]
FLA_0348
Transcription machinery [BR:
fln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FLA_0348
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_ECF
Sigma70_r2
GerE
Sigma70_r4
HTH_28
HTH_23
Terminase_5
TnsD
HTH_38
HTH_40
PF0610-like_N
RAD51D_N
HTH_24
PhyR_sigma-like
Motif
Other DBs
NCBI-ProteinID:
BAV04360
UniProt:
A0A173MA25
LinkDB
All DBs
Position
417562..418128
Genome browser
AA seq
188 aa
AA seq
DB search
MEIVEAVKNGDPNAFSMVFEQFHEKVFGFFMNRMQGNREEAKELTQLTYIKLWQSRHTLS
LSYTIDRQLFVMAKHTLVDYIRREARAEKSKDVVAATYTPQQAVTEFSNSFFEGKDYVIA
RLKQLPPTRKKILQLKMLNGYSNKEIAGLLSISVKTVEDHVTKGLHELRATTTLSVPFLL
FFLLDSMP
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagtagaggctgtaaagaatggtgaccccaacgcattttccatggtttttgaa
cagtttcatgaaaaagtgtttggcttttttatgaaccgcatgcaaggcaacagggaagaa
gccaaagaacttacacaacttacctatattaaattatggcagtcgcgccatacgctgtct
ttgtcgtacacaatagacaggcaattgtttgtgatggccaaacatacgctggtagattat
atccgccgcgaagcaagggccgaaaaaagtaaagacgtagtagccgccacttacacgccc
caacaggcggttaccgaattcagtaattccttttttgaaggcaaagactatgtaatagcc
cgcctgaaacaactgccacctacacgtaaaaaaatattgcagctgaaaatgctgaatggt
tattccaacaaagaaatagccggcctgctgtctatttcggtaaaaacagtggaagatcat
gtaaccaaaggcctgcacgaattaagagctactactacactatcagtaccctttttgctg
ttttttctgctggacagcatgccataa
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integrated database retrieval system
