Filimonas lacunae: FLA_1048
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Entry
FLA_1048 CDS
T05172
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
fln
Filimonas lacunae
Pathway
fln02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FLA_1048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fln03021
]
FLA_1048
Transcription machinery [BR:
fln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FLA_1048
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_16
GerE
Xre-like-HTH
PhyR_sigma-like
HTH_23
HTH_11
Motif
Other DBs
NCBI-ProteinID:
BAV05043
UniProt:
A0A173MBU5
LinkDB
All DBs
Position
1237598..1238194
Genome browser
AA seq
198 aa
AA seq
DB search
MENATLHNEKELLQQAAAGSEAAFKALFMHYWPQVYGTSLHLTKSPEQAKDLAQDLFLKL
WENRTKLAEVSNVAAYLYTSSRNLVIDYQRKKVFNADNVDYLIQFFTSSDTTAQQKLEYR
ELEEALAAAVNTLPDKTKEVFRLSRYEGLSHDEIAQQLGISVHSSRTYITRALAEIREQL
SNHSDSLTLLFILFISRK
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
gtggagaatgcaacgttacataacgaaaaagagctgctgcaacaggcggcggcaggaagc
gaagcagcttttaaagcgctgtttatgcactattggccgcaggtgtatggtaccagcctg
cacctgaccaaatctccggagcaggcaaaagacctggcacaggatctttttctgaagctg
tgggaaaacaggacaaagctggcagaggtgagcaatgtggctgcctacctgtacacctca
tcccgcaacctggtaattgattatcagcgcaagaaagtgttcaacgctgataatgtagac
tacctgatacaattctttacctcatctgataccacggctcagcaaaagctggaatacagg
gaattggaagaagccctggcggcggcagtaaacacactgccagacaaaaccaaagaagtg
tttcgcctgagccggtatgaaggcttgtcgcacgatgaaatagcacagcaactgggcata
tctgttcattcctcccgtacctacataacccgtgcgctggcagagattagagagcagcta
tccaatcattccgacagcctcacattgttgttcattctttttatatcgcggaaataa
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