Filimonas lacunae: FLA_1398
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Entry
FLA_1398 CDS
T05172
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
fln
Filimonas lacunae
Pathway
fln02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FLA_1398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fln03021
]
FLA_1398
Transcription machinery [BR:
fln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FLA_1398
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
GerE
Sigma70_ECF
HTH_23
HTH_Tnp_ISL3
HTH_24
HTH_38
Suppressor_P21
VPS3_C
WHD_HrcA
HTH_68
HTH_29
Xre-like-HTH
RPA_C
DUF722
DUF6115
MarR_2
HTH_9
TetR_N
HTH_11
HTH_28
DUF1318
Phage_antitermQ
Motif
Other DBs
NCBI-ProteinID:
BAV05391
UniProt:
A0A173MD70
LinkDB
All DBs
Position
1708255..1708974
Genome browser
AA seq
239 aa
AA seq
DB search
MGRQGGGMYNRLPHRYNAGNRGLWLTKCIIVHLPLRKSFSLLSIPPAYNESALLHLIAAG
DEAAFREFFESNRNKLYTFIFRFTKTAHVTEELVQDVFMRFWTYRTNLTTVENPAGYLFF
MARNRCIDYLRKVANENAMLEKVWKQISEAQNSTEEQLQMNEVRRLIDTALSRLSAQKRS
VFHLSRYEGLSTREIAQRLQLSEGTVRNIMSDVLLQVRTYLQQHNVTLAIAFAIVFNQL
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgggcaggcagggagggggaatgtataacaggttgccgcatagatacaacgccggtaac
aggggcttgtggctgacaaaatgtattattgtacatttgccattgagaaaatcattttcc
ctgttgtcaatacctcctgcatataacgagtcggcgctgttgcatttaattgcggcgggg
gatgaagcggctttccgggagtttttcgaaagcaaccggaacaaactctacacttttata
ttccgttttaccaaaacagcacatgttacagaagagctggtgcaggatgtttttatgcgt
ttctggacttaccgtaccaacctcactacggtagaaaacccggccggttacctttttttt
atggcgcgcaaccggtgtatcgattacctgcgcaaggtggctaacgaaaatgccatgctg
gaaaaggtatggaaacagatttcggaagcccagaacagcacggaagagcaattgcagatg
aatgaagtgcgccggctgatagatacggccctcagccgcctttcggcccagaaaagatcg
gtatttcacctgagtcgttatgaaggattatccacccgcgaaattgcgcaacgcttgcaa
ttgagtgagggtacggtgcggaatattatgtcagatgtattattgcaggtgcgaacctac
ctgcaacagcataacgtaaccctggccattgcttttgcaatcgttttcaaccagttataa
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integrated database retrieval system
