Filimonas lacunae: FLA_3196
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Entry
FLA_3196 CDS
T05172
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
fln
Filimonas lacunae
Pathway
fln02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FLA_3196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fln03021
]
FLA_3196
Transcription machinery [BR:
fln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FLA_3196
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
GerE
Sigma70_r4
HTH_40
Sigma70_ECF
HTH_16
DUF722
CATSPERG_Ig-like
HTH_24
Lebercilin
HTH_23
HTH_10
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
BAV07173
UniProt:
A0A173MHS8
LinkDB
All DBs
Position
complement(3905487..3906071)
Genome browser
AA seq
194 aa
AA seq
DB search
MQTDCFLYERLRADVARGDAEAFTALFEHYKHKIYSYAYHFSRSVTIAEEVTQDVFLKVW
LNREVLVDVDNIDAWLSVITRNICFNQLKKIAGERKMKAAVATTHVVADEPVNQYIGYKD
QLHTLQLAMQQLTPQQRTIFRLNREMGLKNEEISRQLQLSPNTVKAHMVSALRKIRLFFD
THPVSVLLFFFLLF
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactgattgctttttatatgagcggcttcgtgctgatgtggcacggggtgatgca
gaagccttcacagctttatttgagcattataagcacaagatttattcttacgcctatcat
ttttcccgttctgttactattgccgaggaagttacccaggatgtatttttaaaggtgtgg
cttaatcgtgaggtattggtggatgtagataatatagatgcctggttaagtgtaattacc
cgtaacatctgctttaatcaattgaaaaagatagccggagagcgcaaaatgaaggcggcg
gtagctaccacacatgttgttgcggatgagccggtgaaccagtatatcggatacaaagat
cagctgcacaccctgcaactggctatgcagcaattaactccgcagcaacgcactattttt
cgtttaaaccgcgaaatggggttgaaaaatgaagaaatttcccggcagttgcaattatct
cccaataccgttaaagcgcacatggtcagtgcattacgtaaaattcgcttgttttttgat
acccatccggtatctgttctcctgttttttttcttactcttctag
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