Filimonas lacunae: FLA_4578
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Entry
FLA_4578 CDS
T05172
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fln
Filimonas lacunae
Pathway
fln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FLA_4578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fln03021
]
FLA_4578
03400 DNA repair and recombination proteins [BR:
fln03400
]
FLA_4578
Enzymes [BR:
fln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FLA_4578
Transcription machinery [BR:
fln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FLA_4578
DNA repair and recombination proteins [BR:
fln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FLA_4578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAV08537
UniProt:
A0A173MM30
LinkDB
All DBs
Position
complement(5589341..5593144)
Genome browser
AA seq
1267 aa
AA seq
DB search
MSSTKVQTRVSFGKTKHLAEQPDLLDIQLESFREFFQLETTPDKRNNEGLFRVFKENFPI
TDTRNIFVLEFLDYFIDPPRYTIEECMERGLTYAVPLKAKLRLSCNDEEHVDFQTIVQDV
FLGNIPYMTPRGTFVINGAERVVVSQLHRSPGVFFGQSVHPNGTKIYSARVIPFKGAWME
FATDINNVMYAYIDRKKKFPVTTLLRSIGFETDKDILELFGMATEVAADKKSLQKHLGKK
LAARVLRTWVEDFVDEDTGEVVSIERNEIVMERDTILDEDAIDTISDLDVKSVFVQREDV
GGDYAIIYNTLNKDTSNSELEAVQHIYRQLRGADAPDNETARGIIDKLFFSDKRYDLGEV
GRYKINRKLSVNQKLENKVLTKEDIIEIIKYLVRLTNGKAEIDDIDHLSNRRVRTVGEQL
YAQFGVGLARMARTIRERMNVRDNEVFTPVDLINARTLSSVINSFFGTSQLSQFLDQTNP
LSEITHKRRISALGPGGLSRERAGFEVRDVHYSHYGRLCTIETPEGPNIGLISTLCVHAK
INDMGFIETPYHRVENGNVNLAKIKFLSAEEEDTAKIAQSSAELDANGDFVQDRILCHET
GDFPLLQRTEVEYMDVAPNQIVGLSASLIPFLEHDDANRALMGSNMQRQAVPLILPQSPI
VGTGLEGKAARDARIQIHAEGEGVVEFVDAKEIHVRYNRNDNDRLVSFEDDLIVYRLTKF
IKTNQSTNINLRPAVRKGQKVVKGDFLTEGYATKDGELALGRNLQVAFMPWKGYNFEDAI
VINEKVVREDLFTSIHIEEYELEVRDTKLGEEELTPDIPNVSEEATKDLDENGIIRIGAH
IREGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDAKDASLKAPNGTEGVVIDKKLFQR
AKKDKNAKVREKAQLEKVEKQHEQNAESLKELLLSKLQTLLRDKASTGVANNFGEMLIGK
GAKFNVKNLSSIDYQNVNPLGWTADAVIDDQINILLHNYNIKYNEELGRYKREKFNISIG
DELPAGVLKLAKVYLAVKRKLKVGDKMAGRHGNKGIVAKIVRAEDMPFLEDGTPVDIVLN
PLGVPSRMNLGQIYETILGWCGKKLGVKFATPIFDGATPTEIEEHCTKAEIPMMGHTYLY
DGETGDRFHQKATVGVIYMIKLHHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM
EVWALEAYGAANILQELLTLKSDDIIGRAKTYESIVKGDNIPRAGIPESFNVLVHELRGL
GLDLKFE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaactaaagttcaaaccagggtcagcttcggtaaaactaaacaccttgctgaa
cagcctgacctgctcgacattcagttagaatctttccgtgaatttttccaattagaaact
acacccgacaagcgtaacaatgaagggttgttccgtgtgtttaaggaaaactttcctatt
accgacacgcgtaacattttcgtattggagttcctggattatttcattgacccgccacgt
tatactattgaagagtgtatggagcgtggtctgacctatgctgtgcctttgaaagccaaa
ttacgtttgagctgtaatgatgaggagcacgtagatttccagaccattgtgcaggatgtg
tttttaggtaacattccttacatgaccccccgtggtacgtttgtgatcaatggcgctgaa
cgcgtagttgtatcacagctgcaccgttcacctggtgtattcttcggacagtcagttcac
cctaacggaaccaagatttactctgcaagggtaattccgttcaaaggtgcgtggatggaa
ttcgctaccgacattaacaacgtaatgtacgcgtacattgaccgtaagaagaagttccct
gtaactaccctgttgcgttcaattggttttgaaactgataaagacatcctggaattattc
ggtatggctacagaagtggctgccgacaaaaaatccctgcaaaagcatctgggtaagaaa
ttagctgcacgtgtactgcgtacatgggtagaagatttcgtggatgaagataccggtgag
gtagtttctatcgagcgtaacgaaattgttatggagcgcgataccatcctggatgaagat
gcaatcgatactatttctgatctggatgtgaaaagcgtgttcgttcaacgtgaagacgtt
ggcggtgactacgctatcatctacaatactttaaacaaagatacctctaacagtgaactg
gaagcggtacagcacatctaccgtcaattacgtggtgctgacgctccggataacgaaact
gcacgtggtattatcgataaattattcttcagcgataagcgttatgacctgggtgaagtt
ggtcgttacaagatcaaccgcaaactgagcgtaaaccagaagctggaaaataaagtatta
acgaaagaagacatcatcgaaatcatcaaatacctggttcgtttaaccaacggtaaggct
gaaattgatgatattgatcacctgagcaaccgtcgtgtacgtaccgtgggtgagcaatta
tatgctcagttcggtgttggtttggcccgtatggcccgtaccatccgcgaacgtatgaac
gtgcgtgacaacgaggtatttactccggtagatctgattaacgccagaacgctttcttcc
gtaatcaactctttcttcggtacttcccagttatcacaattccttgaccaaaccaacccg
ttaagtgaaatcacgcacaagcgtcgtatttccgcgttaggccccggggggttaagccgt
gaaagggcaggttttgaggtgcgtgacgtacactatagccactacggccgtctgtgtact
attgaaactccggaaggaccaaacatcggtctgatttctaccctttgcgtacacgcaaag
atcaatgatatgggcttcatcgaaactccataccatcgcgtagaaaacggtaacgtaaac
ctggccaagattaaattcttaagtgctgaggaagaagatactgctaaaattgcccaatcg
agcgctgagctggatgccaacggtgattttgtgcaagacagaatcctttgtcacgaaaca
ggtgacttcccactgttacagagaacagaagtagaatatatggacgttgctcctaaccag
attgttggtttgagtgcttccctgattccgttcctggaacatgatgatgccaaccgtgca
ttgatgggatcaaacatgcaacgtcaggctgtaccgttaatcctgccacagtctcctatc
gtaggtactggtctggaaggtaaagctgcccgtgacgcacgtattcagatacatgcagaa
ggcgaaggcgtagtagagtttgtggatgcaaaagaaattcacgttcgctataacagaaac
gacaatgatcgtttggtaagctttgaagacgatctgatcgtttaccgcttaaccaaattt
atcaaaaccaaccagtcaaccaacatcaacctgcgtcctgccgtaagaaaaggccaaaag
gtagtaaaaggcgacttcttaacagaaggctacgctactaaagatggtgaattggcgtta
ggtcgtaacctgcaagtggccttcatgccatggaaagggtacaactttgaagatgcgatc
gtaattaacgagaaagtagttcgtgaagacctgttcacttctatccacattgaagagtac
gagctggaagttcgtgacactaaactgggtgaagaagaactgactccggacattccaaac
gtatcagaagaagctaccaaagatctggacgagaacggtatcatccgtatcggtgcccat
atccgcgaaggcgatatcctgattggtaaaatcactcctaaaggggaaagcgatcctact
ccggaagaaaaactgttacgtgccatcttcggtgataaagccggtgatgcaaaagatgct
tctctgaaagctcctaacggtacagaaggtgtagtaattgataaaaaactgttccagcgc
gctaaaaaagataagaacgcaaaagttcgcgaaaaagcgcaactggaaaaagttgaaaag
caacacgagcaaaatgcagaatctctgaaagagttattgctgagcaaactgcagacttta
ttgagagataaagcttctacaggtgtggcaaacaactttggcgaaatgctgattggtaaa
ggtgctaagttcaacgttaagaacctgagcagcattgactaccagaacgttaacccgctg
ggttggactgctgatgcagtaattgatgatcagattaatattctgttacacaactacaac
atcaagtacaacgaagaactgggccgttacaagcgcgaaaaattcaatatctctattggt
gatgaattaccagcaggtgtattgaaactcgctaaagtttacctggctgttaagcgtaag
ctgaaagtgggtgataaaatggcgggtcgtcacggtaacaaaggtatcgtagccaagatt
gtgcgtgcagaagacatgccattcctggaagatggtactccggtagatatcgttctgaac
ccactgggtgtaccttcaaggatgaacctggggcagatttacgaaaccatcctgggatgg
tgtggtaaaaaactgggtgttaagttcgctactccaatctttgacggtgctactccaaca
gaaattgaagagcattgtacaaaggctgagataccaatgatgggtcacacttacctgtac
gatggtgaaacgggcgaccgcttccaccagaaagcaaccgtgggtgttatctacatgatt
aaactgcaccacatggtggatgataagatgcacgcccgttcaatcggaccatacagtctt
atcacacaacaaccgctgggtggtaaagcacagtttggtggtcagcgttttggtgagatg
gaagtgtgggcactggaagcatacggtgcggccaacatcctgcaggaactgttaacactt
aaatctgatgatatcatcggtcgtgcgaagacttacgagtctatcgtgaaaggtgataac
attccaagagccggtataccagaatctttcaacgtattagtacacgaattgagaggttta
ggtctggatctgaaattcgaataa
DBGET
integrated database retrieval system
