Filimonas lacunae: FLA_5103
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Entry
FLA_5103 CDS
T05172
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fln
Filimonas lacunae
Pathway
fln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FLA_5103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fln03400
]
FLA_5103
Enzymes [BR:
fln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FLA_5103
DNA repair and recombination proteins [BR:
fln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FLA_5103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAV09056
UniProt:
A0A173MNI8
LinkDB
All DBs
Position
complement(6280004..6283441)
Genome browser
AA seq
1145 aa
AA seq
DB search
MNLSVLLDQYKQSPRLLQLAARLAFAATDTNSSTRQNIFLKNLQGSSAEFLLTAIFGHDQ
CKEVNHLVVLNDAEEAAYFHNTLENLTSALDLFYFPSSFKNRKNFRLLNSSHVMLRTEAL
TRLAAGGNKKIVITHPEALFEKVVLPETLKGNIIHIKTNDTINLEGLMELFVMYGFVRTD
FVYEPGQFAIRGGILDIYSFGNDKPYRVELFGNEVDSIRIFDPESQLSERKLMQVSIIPN
VETQFDSGEKVTLMEFLPENMIVWLKDWDVIKEKISQQEEDLGLFLQRIETAGNTEVIAE
VQDDEDETKIWKDVSLQDFVPVATIERQMQQRMIVEFGYKPQLSTEEIEYNTKPQPAFNR
QFDLLIKDLKAHEAQGYAIYLFAEQAKQLERLHTIFTDLNTELEFVPVATSIHSGFIDAD
LKVVCYTDHQIFQRYHKYRIKQAYNKNKAITLKTLRDLQPGDFVTHIDHGVGTYSGLQKI
EVAGKMQEAVRILYKDGDILYVNINSLHKISKFTGKEGTAPKVNKLGSEVWSKLKEKTKA
KVKEIAFDLIKLYAQRKAQQGFAHMPDNYMQTELEASFVYEDTPDQAKATEDVKRDMEQP
APMDRLVCGDVGFGKTEVAIRAAFKTVLDGKQAAVLVPTTILAFQHYKTFSERLKDFPVT
VDFINRFKSAKEKKETFKRLEEGKIDILVGTHGVLGKEVKFKDLGLMVIDEEQKFGVAHK
EKLKTLKTNVDCLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPVQTEIQVFNEDVIR
DAIYFETERGGQVFFIHNRVLGLQEMAGLLQALCPDLSISYAHGQMEGDELEERIMDFID
KKYDVLICTNIVESGVDIPNVNTIIINNAHHFGLSDLHQLRGRVGRSNRKAFCYLLAPPM
STLPTDSRKRLQTLEQFSDLGSGFQIAMRDLDIRGAGNMLGGEQSGFMADIGFEMYQKIL
EEAIKELKRTSFKELFKDEISKQDDYVSDCTIDTDLQILIPDSYVESITERLSLYTRLDN
CEKEEELVAFHAEMADRFGPIPPEVEDLFTTVRCRWLAVGLGFEKMALKDDTLRCYFINK
NDSPYFESDLFQNIIQYLQVGTNKARLKQSAKNFLLVVDDVKDMNQMHQFLGRMYKGVII
DKKEV
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgagtgtgttactggatcagtacaaacaatccccccgccttttacaattggcg
gccaggctagcttttgccgctactgatacaaatagttctaccaggcaaaacatctttctt
aaaaatttacaaggcagtagtgctgagtttttgttaacagccatcttcgggcatgatcag
tgcaaggaggtaaaccacctggtggtgctgaacgatgccgaagaagctgcctattttcat
aatacactggaaaaccttaccagtgcattagatctgttttacttcccgtcttcttttaag
aacaggaaaaacttccgtttgctcaacagctcacatgtgatgttgcgtaccgaagcgctg
accaggctggcggcaggcgggaataaaaaaattgtgatcacccatcccgaagcattgttt
gagaaggtggtactacctgaaacgctgaaggggaacatcattcatattaaaacaaacgac
accattaacctggaaggtttgatggaactgtttgtaatgtatggctttgtgcgtaccgat
tttgtgtacgaaccgggacagtttgctattcgtggtggcatcctggatatttactcgttt
ggcaatgacaagccttaccgcgtagagctgtttggtaatgaggtggacagtatcaggata
tttgatcccgaatcgcagctgagtgagagaaagctcatgcaggtaagcattattcctaac
gtggaaacacaatttgatagcggcgaaaaagtaaccctgatggagtttttgccggagaat
atgattgtgtggctgaaagactgggatgtgatcaaggaaaagataagccagcaggaagaa
gacctgggcttgtttttacaaagaatagaaacagcaggcaataccgaggtaatagcagag
gtgcaggatgatgaggatgaaaccaaaatatggaaggatgtaagcctgcaggactttgtg
cctgttgccactattgagcgacagatgcaacaacgcatgattgtggagtttggctataag
ccgcagttgtctaccgaagaaattgaatataataccaagccgcagcccgctttcaaccgt
cagtttgatttactgattaaagatttaaaggcgcatgaagcacaaggctatgctatttac
ctgtttgccgagcaggctaaacagctggaaaggctgcatactattttcaccgatttaaat
actgaactggaatttgttccggtagctacctccatacatagcggatttattgatgccgat
ttaaaggtggtatgttataccgatcaccagatattccagcgttatcataaataccgcatt
aagcaggcctataataaaaacaaggctattacactgaaaaccctgcgcgatcttcaaccg
ggcgattttgtaacacacatcgatcatggtgtaggcacttacagcgggttacagaagata
gaggtggcgggtaaaatgcaggaagcggtgcgcattttatataaggatggcgatatcctg
tatgtgaacattaactccctgcataaaatttccaagtttaccggtaaagagggcaccgcg
cccaaagtaaacaaattgggtagtgaggtatggagtaagctgaaagaaaaaaccaaggcg
aaggttaaagaaattgcctttgatttaataaagctgtatgcgcaacggaaggcgcagcaa
gggtttgcgcatatgcctgataactacatgcaaaccgagctggaagcttcattcgtgtat
gaagatacgcctgaccaggccaaagctacagaagatgtgaagcgtgatatggaacagccg
gcacctatggacaggctggtgtgtggtgatgtaggctttggtaaaacagaggtggctata
cgtgctgcttttaaaacagtattggatggcaagcaggcagccgtgctggtgccaactact
atcctggctttccagcactataaaacgtttagcgagcgtttaaaagacttcccggtaacc
gttgattttatcaaccgttttaaatcggccaaagagaagaaagaaaccttcaaacgttta
gaagaaggtaagattgatatattggtagggacccatggtgtgttgggtaaagaggtgaag
tttaaagacctggggctgatggtgattgatgaagaacagaagtttggtgtggcacataaa
gagaagctgaaaacattaaaaaccaatgtagactgtttaacacttacggcaactcctata
ccacgtaccctacagttttcgctgatgggggcacgtgacttaagcatcattaatacacca
ccaccgaaccgccaacctgtacaaaccgagatacaggtatttaatgaagatgtgatacgc
gacgccatttactttgaaacagaacgtggtggccaggtgttctttattcataaccgtgtg
ttgggattacaggaaatggctggcctgttacaggcgctttgcccggatttaagtatttcc
tatgcgcatggacaaatggaaggagatgaactggaagagcgtattatggatttcattgac
aagaaatacgatgtgcttatctgtactaacattgtagaaagtggtgtggacattcctaat
gtaaacaccattatcattaacaatgcacaccattttggtttaagcgatctgcaccagctg
cgtggccgtgtgggtagaagtaatagaaaagcattctgttatttgttggcaccacctatg
agtacattgccaaccgattcgcgcaaacgcctgcaaacattagagcagttcagtgatttg
ggcagtggtttccagattgctatgcgcgacctggatattcgtggtgcaggaaatatgctg
ggtggtgagcagagtggttttatggcagatatcggctttgagatgtaccagaaaatattg
gaagaagcgattaaggaattaaagcgtacttcctttaaagaattgttcaaagacgagatc
agcaagcaggatgattatgtaagcgattgtactatcgataccgatttacagatattaatt
cctgattcttatgtagaaagtattacggaacgtttatcgttgtatacgcgtttggataac
tgtgaaaaagaagaagagttagtggcgtttcatgcagagatggccgacaggtttgggcct
attccaccggaggtagaagacctgtttaccacagtaagatgccgctggctggccgtggga
ttaggttttgaaaagatggcattgaaggatgacacgttgcgttgctatttcatcaacaaa
aacgattcgccttattttgaatcagacctgtttcaaaacattattcaatacctgcaggta
ggtactaacaaagcgaggttaaaacaatcagctaaaaactttttgctggtggtagatgat
gtgaaggatatgaaccagatgcaccagtttttagggcggatgtataagggcgttattata
gataaaaaagaagtataa
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