Filimonas lacunae: FLA_5333
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Entry
FLA_5333 CDS
T05172
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
fln
Filimonas lacunae
Pathway
fln02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FLA_5333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fln03021
]
FLA_5333
Transcription machinery [BR:
fln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FLA_5333
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
HTH_11
DUF722
Sigma70_ECF
HTH_38
PF0610-like_N
HTH_24
GerE
HTH_AsnC-type
HTH_Tnp_ISL3
SGNH
DUF6362
DUF2805
HTH_29
DUF2774
HTH_20
HTH_DeoR
HTH_28
Phage_CP76
HTH_22
DUF977
M3K_C
Xre-like-HTH
HTH_ParB
HTH_10
HTH_Crp_2
HTH_Mga
HTH_30
HTH_40
GntR
Motif
Other DBs
NCBI-ProteinID:
BAV09285
LinkDB
All DBs
Position
6548312..6548911
Genome browser
AA seq
199 aa
AA seq
DB search
MRTEKLHNEPALLQALANGSSEAFTLIFTHYSAGVYDAAMAYLQNENQAQEAVQEVFLKI
WQKREQLAEVEKLQDYLFIVARNYIFNQLKHNALTVTVLHQHYQQSNTFSNDTDYRVREK
QYQQLLEAAINTLPAERKKIYLLAKNEELSYEQIAQQLGISRHTVKNQMYQALQTIRLYM
QQYMPLYLTPLSLTVLIPH
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcacagagaaattacataacgaaccggccttactacaggcactggctaatggcagt
tccgaggcatttacgcttatttttacacattatagtgcaggagtgtatgatgctgcaatg
gcctatttgcaaaatgaaaaccaggcgcaggaagcagttcaggaggtatttttaaaaata
tggcagaagcgggaacaactggctgaggtggaaaaactgcaggactacctgtttattgta
gcccgcaattacattttcaaccaactgaaacacaacgcgcttactgttaccgttttacac
cagcactatcaacaatccaacacattttctaacgacaccgattaccgggtaagggaaaaa
caataccagcaattgctggaagctgctatcaacaccctgccggcagaacgtaaaaaaatt
tacctgctggccaaaaatgaagagttgagctacgaacaaatagcccaacaactcggcata
tcccgtcatactgtaaaaaatcaaatgtaccaggctttgcaaactatacgtttgtatatg
caacagtacatgcccctctaccttactcccctttccctgacggttttgatacctcattaa
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