Filimonas lacunae: FLA_5385
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Entry
FLA_5385 CDS
T05172
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fln
Filimonas lacunae
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fln03016
]
FLA_5385
Enzymes [BR:
fln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FLA_5385
Transfer RNA biogenesis [BR:
fln03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FLA_5385
Prokaryotic type
tRNA splicing ligases
FLA_5385
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAV09337
UniProt:
A0A173MPE1
LinkDB
All DBs
Position
complement(6616884..6618335)
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AA seq
483 aa
AA seq
DB search
MARLNLKAKEIRALGYEEGPVVSIAMQVMEKHYKHYTKEAALDILKNILSAPNTFANNDV
LCKIANELMEEVPEEKSQIELPENGLHYNVFGADFIEEAAIRQMNGAARLPVTVAGALMP
DAHAGYGLPIGGVLATDNAVIPYAVGVDIGCRMCLSIYDIDVRDLTRKEPFLVQALRKST
LFGTGREFEQGTEHEVLDSPLFNDLHILTQLQAKAARQLGSSGSGNHFVEFGEVVIEEAD
AVLQVPAGKYLGILSHSGSRGLGATVANHYTQVARQKRLLPSAAQNLSWLSLDEQEGIEY
WLAMNLAGDYAKACHDVIHQKLSKQLGRKPLRIVENHHNFAWKEIHEGREVIVHRKGATP
AGKDVLGIIPGSMTAPGYIVKGKGEPASIASASHGAGRKFSRSHAATSTTHSALQAELRK
HHVTLLSGGLDEAPFAYKDIDAVMAAQKQLVNTIGKFYPRIVKMDGAGAANWKPTRKTPE
EGE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggttaaatttaaaagcaaaggagatacgggcattaggctacgaagaaggcccg
gtggtaagtatcgccatgcaggtaatggaaaagcattacaaacattatactaaagaagcg
gcactggatatattaaaaaacattctttcagctcccaacacatttgctaataatgatgtg
ttgtgtaaaatagcaaatgagctgatggaagaggtgccggaagaaaaatcacaaatagag
ctgcctgaaaatgggctgcactataatgtgtttggcgctgattttatagaagaagctgct
atccggcaaatgaatggcgcggcccggctgcctgtaacggtagcgggggctttaatgccc
gatgcacatgcggggtatggcttacctattggcggagtgctggcaacagacaatgcggtt
attccctatgcggtaggcgtggatattggctgccgcatgtgtttaagcatttacgatatt
gatgtgagagacttaaccaggaaagaaccctttctggtgcaggccttgcgaaaaagcact
ttgtttggtaccggtcgtgaatttgaacagggtactgagcatgaagtgctggatagtcct
ttgtttaacgatctgcatatattaacgcaattgcaggcgaaagcagccaggcagttaggt
agctctggttctggtaatcactttgttgaatttggcgaagtggtgattgaagaagccgat
gccgtactacaggtgccggcaggtaaatacctgggcatactatctcactcaggttcccgt
ggtttgggagcaaccgttgctaaccattatacacaagtagccaggcaaaaacggctactg
ccttccgcagcacaaaatctttcgtggttatcgttggatgaacaggaagggatagaatac
tggctggctatgaacctggcgggtgattatgccaaggcctgccacgatgttatacaccaa
aaactatcaaaacaacttggacgaaagccgttgcgtattgttgaaaaccaccacaatttt
gcctggaaagagatacatgaagggcgggaagtaatagtgcaccgtaaaggggctacacca
gctggtaaagatgtgctgggtattattcccggttctatgactgcaccaggctacattgta
aaaggcaagggtgaacctgcttctatagcatctgcatcgcatggtgcgggacgcaaattc
agccgctcgcatgctgccacttccaccacacatagcgccttgcaggccgagttgcgaaag
catcatgtaaccctgctgagcggcggattggatgaagcgccttttgcttataaggatatt
gacgcagtgatggctgcacaaaaacagttagtaaataccattggcaagttctatccacgc
attgtaaaaatggacggagcgggagctgctaattggaagcctacccggaaaacaccagaa
gaaggggagtaa
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