Filimonas lacunae: FLA_6082
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Entry
FLA_6082 CDS
T05172
Name
(GenBank) hypothetical protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fln
Filimonas lacunae
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fln03016
]
FLA_6082
Enzymes [BR:
fln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FLA_6082
Transfer RNA biogenesis [BR:
fln03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FLA_6082
Prokaryotic type
tRNA splicing ligases
FLA_6082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAV10028
UniProt:
A0A173MRQ9
LinkDB
All DBs
Position
7373893..7375314
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AA seq
473 aa
AA seq
DB search
MKTEINGDDLLAIGYTEGRVLGEALKAAAALPDITREELLALLTKVKQYPENFLDDEHME
SLATALIEELNKPVDTTIALIEEKREYAVYGADYIEEGAGKQMAIAMQLPVTVAGALMPD
AHQGYGLPIGGVLATRNAIIPYGVGVDIGCRMALSVFDIPAEHFYENEAIYKRELIAHTK
FGAGHGFHGRYKADHAVLDRSEFNITPFVKNLQDKAASQLGSSGGGNHFVEWGIIEFEQR
DEVLNIEKGKYLALLSHSGSRGLGATIAGYYTRLAKDICRLPKEAANLAYLDMASEAGQE
YWLAMNLAGDYASACHEVIHNKLTAAVGARVLAKVENHHNFAWKEQWHGEEVIVHRKGAT
PAGKDVMGIIPGSMTAPGFLVRGKGNEDAINSASHGAGRQLSRTKAIQQISQQDMKAVLK
EHGVTLIGAGLDEAPMAYKDIHKVMAAQHDLVDVVARFEPKMVRMADDGSKED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacagagataaacggagatgatttactggccattggttataccgaaggccgtgtg
ttgggggaagccttgaaagcggcggcagcattgccggatataacacgggaagaattgctg
gcattgctaacgaaggtgaaacagtatccggagaactttttggatgacgagcatatggag
tcattagctacagccctgattgaagaattgaataagccggtagatactactattgccctg
atagaagaaaaaagagaatatgccgtatatggtgcggattatatagaggaaggcgcaggt
aagcaaatggcaatagcgatgcaattgcccgttacggtggcaggggcattaatgcctgat
gcgcaccagggatatggcttacctataggtggtgtgctggctacccgtaacgctattatt
ccttatggcgtgggtgtggatatcggttgtagaatggcgttatcggtatttgatatcccg
gcagaacatttctatgagaacgaagctatttataaacgtgaactgatagcgcataccaag
tttggtgcgggacatggttttcatggccgttataaagctgaccatgcggtattagaccgg
agcgaattcaatattaccccgtttgttaaaaatctgcaggataaagctgcatcacaactg
ggatcttcggggggaggtaaccactttgtggaatggggtattattgaatttgaacagcgt
gacgaagtattgaatatagaaaagggtaaatacctggctttgttatcgcattccggatcg
agaggtttgggggctactatagcaggatattataccaggctggcaaaagatatttgccgt
ttacctaaagaggctgctaacctggcctacctggatatggcatcagaagccgggcaggaa
tactggctggctatgaacctggcaggcgattatgcttcggcatgtcacgaagtaattcat
aataagttaaccgcggccgtaggggcgcgtgtattagccaaggtggaaaaccaccataac
tttgcctggaaagagcaatggcatggtgaagaagtgattgtgcatagaaaaggagccacg
ccagccggtaaagatgtgatgggtattattccgggtagcatgacagcgccaggcttcctg
gtaagaggtaaagggaatgaagatgctattaactccgcttcgcatggtgccggacgccag
ttaagccgtaccaaggctattcagcagatatcgcagcaggatatgaaggcggtgttgaaa
gagcatggtgttaccttaatcggggccggtttggatgaagcgcctatggcgtataaggat
attcataaagtaatggctgcccagcatgacctggtagatgttgttgcccgttttgaacct
aaaatggtgcgtatggcagatgatggcagcaaagaagattaa
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