Filimonas lacunae: FLA_6212
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Entry
FLA_6212 CDS
T05172
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fln
Filimonas lacunae
Pathway
fln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FLA_6212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fln03019
]
FLA_6212
03400 DNA repair and recombination proteins [BR:
fln03400
]
FLA_6212
Enzymes [BR:
fln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FLA_6212
Messenger RNA biogenesis [BR:
fln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FLA_6212
DNA repair and recombination proteins [BR:
fln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FLA_6212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
QueC
Rio2_N
Acetyltransf_11
Motif
Other DBs
NCBI-ProteinID:
BAV10152
UniProt:
A0A173MR74
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All DBs
Position
7546686..7548599
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AA seq
637 aa
AA seq
DB search
MKQSIAVLHKYWGYPSFRGAQEMVIDKLLEGKDVFALLPTGGGKSLCFQVPAMMHRGVCL
VVTPLIALMKDQVEGLEKRGIGAMAIHSGMNNIEVRRTLDEVARDVDIRFLYVSPERLNT
PLFLQYIDALDISLLVVDEAHCISQWGYDFRPSYLRIGELRKQLSSSVPCIALTASATPM
VQEDIIERLQLKKPAVFQQSFDRPELAYRVFKVDSKINKILEALEKVQGSSIVYCSTRRR
TQDVSRLLQMQGIGADFYHAGLPQDDRSAKQKAWISGEVRVMVCTNAFGMGIDKPDVRTV
IHYDVPDCLENYYQEAGRAGRDGKKAYAVLLYQHQDVEALQELPDMRYPAIEDIKKVYQA
LADYLNIPVGVGEGVYYDFDFNEFARNFHLEPRLAMNAIKMLEQEGHLSFKENVFIPAQV
QFMAARDQLFQIETVYPQLDGVTKCLLRSYEGIYDNHVAIYEKQIARLCRLTVEEVKQQL
MQLHRLDIIEYLPQKEKPQIQYILNRAPANFLHIDVKNYAQRKELYVQRMQTMLRYLHLE
KECRSRYIATYFGEENGRDCGVCDNCMTRKAATGITTAEFKQIAQEVYRVIAQQQYPLKE
VVAQLPDVAEGKVQEVIRFLLAEEKIAMHNDGYLYRV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatcaatagcggttttacataagtattggggatacccctcttttcgcggagca
caggaaatggtcatagacaaactgctggaaggaaaagatgtgtttgccctgctgccaacg
ggtggcggaaaatcgctatgctttcaggtgcctgctatgatgcatcgcggagtatgcctg
gtggtaacgccgttaatagccctgatgaaagaccaggtagaaggtttggagaaaagagga
ataggggcaatggctatccatagcggtatgaacaatatagaagtgcgccgtacattagac
gaggtagcccgggatgtagatatccgttttttatatgtatcgccggaacgtttgaatacg
cccttgtttttgcagtatatagatgcactggatatttccctgctggtagtggatgaagcc
cactgtatttcgcaatggggctacgatttccgtccctcttacctgcgcataggagagttg
cgtaagcaactgtcgtcatctgttccttgtattgccttaaccgcttctgccacccctatg
gtgcaggaggatattatagagcgcctgcagctgaaaaagccagcggtgtttcaacaatcg
ttcgacaggccggagctggcctaccgggtatttaaggtagatagtaaaataaataagata
ctggaggcgctggaaaaagtacaaggcagcagtattgtgtattgcagcacacgccgccgt
acacaggatgtgagcaggcttttgcagatgcagggtattggagccgatttttaccatgcc
ggattgccgcaggatgatagaagtgccaaacaaaaagcatggataagcggggaggtgcgg
gtaatggtttgtaccaatgcatttggtatgggcatagacaagccggatgtgcgcacggtt
atacattacgatgtgccggattgcctggaaaattactaccaggaagcagggcgtgcaggc
agggatggtaaaaaggcctatgccgtgttgttataccagcaccaggatgtagaagcatta
caggagttgcctgatatgcgttaccctgccattgaagatattaagaaggtgtaccaggcg
ctggccgactatttgaatattcctgtgggggtaggggaaggtgtttattatgattttgat
tttaatgagtttgcccgcaattttcatttagagccacgactggctatgaatgctattaaa
atgctggagcaggaagggcatctgagctttaaagagaacgtgtttattccggcccaggtg
cagtttatggccgcccgcgatcaactgtttcagatagaaacggtatacccccaactagac
ggggtaaccaaatgtttgttgcgtagttatgaaggtatttatgataaccatgtagccatc
tatgaaaagcagatagcccgtttatgccgtttaacggtagaagaggtgaaacagcagttg
atgcagctgcaccggttagacattattgaatatctcccacaaaaagagaagccacagata
cagtatatcttaaacagagcccccgctaattttttgcatattgatgttaaaaactatgcg
caacgaaaagaactttatgtgcaacgtatgcaaacaatgctacgttatctgcacttagaa
aaagagtgtcgtagcaggtatattgctacctattttggggaagagaatggaagggattgt
ggagtatgtgataactgcatgacccgcaaagcggccactggtattactacggctgagttt
aagcaaattgcgcaggaggtgtaccgtgttattgcccaacagcagtatccgttaaaagag
gtggtggcgcagctgccggatgttgcggaaggaaaggtgcaggaagtgattcgctttttg
ctggcagaagaaaagatagccatgcataatgatggctatctgtatcgtgtataa
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