Filimonas lacunae: FLA_6428
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Entry
FLA_6428 CDS
T05172
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fln
Filimonas lacunae
Pathway
fln03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FLA_6428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fln03400
]
FLA_6428
Enzymes [BR:
fln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FLA_6428
DNA repair and recombination proteins [BR:
fln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FLA_6428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
BAV10366
UniProt:
A0A173MS60
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All DBs
Position
7794038..7796782
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AA seq
914 aa
AA seq
DB search
MSLARYKQKRSFSHTPEPAGGKASSGRLRFVIQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSTDPSVKRLAMMVEDHPYDYRTFEGIIPEGNYGAGTVIVWDEGTYEPLEQAKTKKEQEK
LLLKQLNAGSLKFALHGKKLKGEFALVHTHGRGENSWLLIKHRDKYAATTDITKKDKSVV
SGKTLAKVEATSTHIYGEDHKEPDTAGKVKVPVKKVAANKTAAKTAFKKTAAKKAVKPKS
ATTQAVKKKAPATQGVKKAFPKNSSPMLATLVDKPFDEEGWLYEIKWDGYRALTLKHGKS
TELVSRNQKSFNEKFYPIYEAVKQWKVDAVVDGEIVVVNKNGVSNFGLLQNWRSEADGDL
YYYVFDLLWLNGYDVTSLPLQQRRQLLKEQLPSPDGPIRMSENFNATATEFLAAAAETGL
EGIIAKKENSKYEPGNRSRNWLKMKTGKRHEVVIGGFTQNKGSVKLFSSLLVGVYENGKL
QYTGKIGTGFTEAMQKDMMKQFKPLITSKLPFEQEPDVNKPSRFRPDPPHASVTWLRPKL
VCEVSYTEITSDGVMRHPSFEGMREDKKAKDVKREIAVPVKTVKENKSALHTSKVLQPAG
KTARKTLLNPTDESQVRKVNGQELSFTNLDKIYWPKDKISKRDMLNYYYQVAPYILPYIK
NRPQSLNRFPNGIDGQAFYQKDVTGKVPDWVTLFPYHSKDDKEQKNFMVCTEEAGLLLMA
NMGCIEINPWSSTVNKPDNPTWCIIDLDPGKNTPFDKVIEAANVTHQLLDAAGIPSYCKT
SGSTGMHIYIPLGAKYTYEQSKEFARVIVTLVQAQIPAFTSIERQISARKGKLYLDFLQN
RPQATLAAPYSVRPRPKASVSMPLHWEEVKKGLKVTDFTIANAIARIQAEGDLFKPVLGK
GISLTKALKQLEVL
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgccagatataagcaaaagcgcagcttttcgcacacaccagaacccgctgga
ggtaaagccagcagtggccgccttcgttttgtgatccagaaacatgatgcttctcatttg
cactacgatttccggctggaaatggatggcgtattaaaaagctgggcagtgcctaaaggg
ccttctacagacccttctgtaaaacgcctggctatgatggtagaagatcacccttacgat
taccgcacttttgaaggaattataccggaaggtaattatggtgcaggaacggtgattgta
tgggatgaaggtacctatgagccattagaacaggcgaaaacaaagaaagaacaggaaaag
ttgctgttgaagcaattgaatgccggctcgctcaagtttgccctgcatggtaaaaagctg
aaaggagaatttgctttagtacatacgcatggaaggggagaaaactcctggttgctgatt
aagcaccgtgataaatatgccgctactactgatattaccaaaaaggataaatcggttgtt
tcaggcaaaacattggcaaaagtagaagctaccagcacccatatctatggggaagatcat
aaagagcctgatactgcggggaaagtaaaggtgcctgtgaagaaggttgccgcaaataaa
acagccgctaaaacagcctttaaaaagacggccgctaaaaaagcagttaagcctaaatcc
gccaccacccaggccgttaaaaaaaaagccccagccacacagggcgtaaaaaaagccttt
cctaaaaatagtagccctatgctggcaaccctggtagataaaccatttgatgaagaaggc
tggctatacgaaattaaatgggatggttaccgggcattgacgttaaagcatgggaaatct
actgaactggtttcgcgcaatcagaaatcgtttaatgaaaaattctatccaatatatgaa
gccgtaaagcaatggaaggtggatgctgtagtagatggagaaattgtggtagtgaataaa
aacggggtatctaatttcggtttgttgcaaaactggcgcagtgaagccgatggcgatttg
tattactatgtatttgaccttctctggttgaatggatatgatgtaacctccttgcctttg
cagcagcgtcgccagttgttgaaagagcaattaccttccccggatggacctatcaggatg
agtgaaaactttaatgctactgctaccgaatttctggctgctgctgctgaaaccggcctg
gagggtattatcgctaaaaaagaaaatagtaaatatgaacctggtaaccggtcgcgcaac
tggcttaaaatgaaaacgggtaaaaggcatgaagtggtaataggtggctttacgcaaaat
aagggttctgtgaagttgttcagttcgctattggtaggtgtatatgaaaatggaaaactg
caatacaccggtaaaataggcaccggctttacagaagcgatgcaaaaagatatgatgaag
cagtttaagccccttattaccagcaagcttccttttgaacaggaaccggatgtaaataaa
ccttcccgcttccggcccgatccacctcatgccagcgttacatggttacggcctaagctg
gtatgtgaagtaagctataccgaaataaccagtgatggcgtaatgcggcatccttctttt
gaaggcatgcgggaggataaaaaagcaaaagacgtaaaacgcgaaatagccgttcccgtg
aaaacagtgaaagaaaacaaaagcgccctgcacaccagcaaggtgctacagccagctggc
aaaacagcacgtaaaaccctgttgaatccgactgatgaaagccaggtgcggaaggtgaat
gggcaggagttgagctttaccaacctggataaaatatactggcccaaagacaagatctct
aaaagagacatgctgaattattactaccaggtagcgccttatatcttgccctatatcaaa
aacagacctcaatcgttgaaccggtttccgaatggcattgacggtcaggcattttaccag
aaagatgtaacgggtaaggtgccggattgggtaaccctgtttccttatcatagcaaggat
gacaaagagcagaaaaactttatggtatgtacagaggaagccggactgttgttaatggcc
aatatgggctgcattgaaatcaatccctggagcagtaccgtgaacaagccggacaatcct
acctggtgcatcatcgacttagatcccggtaagaatacaccgtttgataaggtgatagaa
gcggccaatgtaacacatcagttactggatgcggcaggtattccttcttattgcaaaacc
tccggctctacaggtatgcatatctatattccgttaggagcgaaatatacctatgagcaa
tcgaaagagtttgcccgggtgattgtgaccctggtgcaggcgcagatacccgctttcacc
agtatagagcggcagataagtgcccgtaagggaaagttatacctcgactttttacaaaac
cgcccgcaggccaccctggctgctccttattcggtaaggcccaggcctaaggcttcggtg
tccatgcccttgcattgggaagaggtgaaaaagggattgaaggttaccgactttactatt
gccaatgccatagccaggatacaggccgaaggcgacctgtttaagccggtattgggcaaa
ggcattagcctgactaaagcattgaagcaactggaagtgctctaa
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