Flavobacterium litorale: K1I41_05425
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Entry
K1I41_05425 CDS
T08396
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
flo
Flavobacterium litorale
Pathway
flo03030
DNA replication
flo03430
Mismatch repair
flo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1I41_05425 (dnaE)
03430 Mismatch repair
K1I41_05425 (dnaE)
03440 Homologous recombination
K1I41_05425 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flo03032
]
K1I41_05425 (dnaE)
03400 DNA repair and recombination proteins [BR:
flo03400
]
K1I41_05425 (dnaE)
Enzymes [BR:
flo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K1I41_05425 (dnaE)
DNA replication proteins [BR:
flo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K1I41_05425 (dnaE)
DNA repair and recombination proteins [BR:
flo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K1I41_05425 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
QYJ69332
LinkDB
All DBs
Position
1215993..1220495
Genome browser
AA seq
1500 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHDEMGNLIEHQDYIINPDGFNIPY
DAERIHGISTELAVEKGIAIKDALEKFNAALSKSKFIVGQNVGFDINIMGSEFYRYGINT
SLSNMKVLDTCTEVTAEMLQLPGGRGGKFKLPTLTELHEYLFDEPFAEAHNATADVEATT
RCFLELVKREVYTYEQLDVPPTYFYDFRKNNPQTIQLIGLKHINLKAASDAVRERLNKLK
AEQQPTVTSIEGQEALKDANFVHLHNHTQFSVLQSTISVPALVKATAKNKMPAVAMTDHA
NMMGAFHFVSNVLNHNKAAEAKNKEALENGEIPEETIIKPIVGCEFFVCENHKDKSRKDN
GYQVVFLAKNKNGYHNLAKMSSIAYTDGFYYVPRIDKKVVEQYQDDIIVLSGNLYGEIPN
KILNIGENQAEEALLWWKETFGKDFYIELMRHGQEDEDRVNQSLITLARKHDVKLIATNN
TYYLDKENSHAHDILLCVKDGEKLSTPVGRGRGFRYGLPNEEYYFKSGDEIKNLFKDIPE
AIINIQEIVDKVEIYSLYRDVLLPKFDIPEEFLVAEDDTDAGKRGENKYLRYLTYEGAKK
RYDEITDEIKERLDFELKTIENTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAY
CLGITNIDPIAYDLLFERFLNPDRISMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIIT
YGTMAAKSSIRDTARVLDLPLFEADKIAKLIPNMKLAKIFDMDDKTLRGALRSEEFERVQ
ELLSMSESEDLGGETIQQAKVLEGSLRNTGIHACGVIITPDDITNFVPVAVAKDSDLYVT
QFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYKRGVDLDPDNFPIDDVKTYELFQRG
ETVGIFQYESPGMQKYMKDLKPTVFADLIAMNALYRPGPLEYIPSFIRRKNGEEEIKYDL
DACEEYLKETYGITVYQEQVMLLSQKLANFTKGEADVLRKAMGKKQKAVLDKMKPKFISQ
AAEKGHEPDTLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNN
MNDIKQVTFFMEECKRMGLEVLGPDVNESFYKFTVNSQNAVRFGMGAIKGVGSGAVKTIV
EGRKTGRYKSIFDLAKRIDLRAANKKAFENLALAGGFDGFDDTHRAQYFHNEDETSTFLE
KAIRYGAKFQENENSSQVSLFGEASDVQIPEPVVPPCEEWTTMEKLAKEKEVVGIYLSGH
PLNDYKFEMKYFCNSKLEALKELDKHIAKNLTFGGIIIDVQHRIAKNGKGWASFILEGYD
ESYEFRIYGEEYLKFRHFLVANSFTYIKVLVREGWVNHEGKRGEPRIQFITIQYLQDVLD
TFAKKLVIQFSVNDLQDDVITGLQNLLYTNKGDNSVTFQVMELEKVTKQVEIAADMVNEP
TEPYGDNPEQQENASSTVITNVEDVQVTTKLTMPSRKLKIKISNELLQELERLQINFKLN
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atgtacttgatatttgataccgaaacaactggattacccaaacgttgggatgcccccatt
accgatacagataactggcctagatgcgtgcaaattgcatggcagctccacgacgaaatg
ggcaatttaatagaacatcaggattacatcattaatcctgatggtttcaatataccttat
gatgctgagcgtatacatggtatatctaccgagctcgctgttgaaaaaggtattgccata
aaggatgctttagaaaagtttaacgcagcactttcaaaatctaaatttatagtaggtcaa
aacgtagggttcgatattaatataatgggttctgaattttatcgttatggtataaatact
tctttatcaaacatgaaagttttggatacttgtacggaagtaactgcagaaatgttgcag
ctacccggaggtcgtggcggcaaatttaaactgcctacacttacagaattacatgagtac
ttgtttgacgaaccttttgcagaggcacacaatgctactgcagatgtagaggctacaaca
cgttgttttttagagttagtaaaacgtgaagtatatacatatgagcaattagatgttcca
ccgacctacttttacgactttagaaaaaataatccccagacgatacagctaataggactt
aagcacattaatctaaaagcagcttcagatgctgttcgcgaacgcttaaataaacttaaa
gccgaacagcagcctacagtaacatcaatagaagggcaagaggcattgaaagatgctaat
tttgtacatcttcataaccatacacaattttcagtactacaatcaactatatcggtgccg
gctttggttaaggcaacagcaaaaaataaaatgcctgcggttgccatgacagatcatgct
aatatgatgggggcttttcattttgttagtaatgtactcaatcacaataaagctgctgaa
gcaaaaaataaagaagcccttgagaatggagagatacctgaagagacgattataaaaccg
attgttggatgtgagttttttgtttgcgaaaatcacaaagacaaatctaggaaagacaat
ggataccaagttgtttttttggcaaagaacaaaaacggatatcacaatcttgcaaaaatg
tcttcaatcgcttatactgatggtttttattacgttccgaggatagacaaaaaggtcgta
gagcagtatcaggatgatattatagtgctatcaggtaacctatatggagagataccaaac
aaaatactcaatataggtgaaaatcaagctgaggaagctttgttgtggtggaaagaaact
tttggtaaagatttctatattgaattgatgcgtcatgggcaggaagatgaggacagggtt
aatcagtcgttaattacactagctagaaaacacgatgtaaaactcatagctacaaataat
acatattatttagataaagaaaactctcatgctcatgatatactattatgtgtaaaagat
ggagaaaaattatctacccctgtaggtagaggtcgtggttttcgttacggattgcccaac
gaagagtattatttcaagtctggagatgaaataaaaaacctttttaaggatatccctgaa
gcaattatcaatatacaagaaatagtagataaagtagagatatattcactataccgtgat
gttttattacctaagtttgatatacccgaagaatttttagttgctgaagatgatacagat
gcagggaaacggggggaaaataaatacttaagatatttaacttatgaaggtgctaaaaaa
cgttatgatgaaataacagatgaaataaaagagcgccttgattttgaattgaaaactatt
gaaaatacaggctacccaggatacttcctaattgtacaagacttcattgctgaggcaaga
aatttagatgtttctgtagggcctggtagaggttctgcagcaggttctgcagtagcttat
tgcttaggaataaccaatatagatcctattgcttacgatttactttttgagcgtttctta
aaccctgatcgtatatctatgcctgatattgatattgattttgatgacgaaggtcgtggg
cgtgttatggactatgttataaataaatatggcgctaaccaagtagcacaaattattact
tatggtactatggcagcaaagtcttccatacgagatactgctagggtgcttgacctccca
ttgtttgaagctgataaaatagctaaactcatacctaatatgaaacttgctaagatattc
gacatggacgataagacattaagaggagcacttcgctctgaagaattcgaaagagtccaa
gagttgttaagtatgtctgaaagtgaagacttaggtggtgagaccatacaacaagcgaaa
gtattagaaggttcgttaagaaatacaggtatacatgcttgtggggtaattattacccct
gatgatataaccaactttgttccagtggctgtagccaaggattctgatttgtatgttaca
cagtttgataattctgtagtggaaagcgcaggattactcaaaatggattttttgggactc
aaaacactaacacttataaaggacactgtaaaactggtaaaatataagagaggtgttgac
ttagatccagacaattttcccatagatgatgttaaaacatatgaactttttcaacgaggt
gaaacagtaggaatatttcaatatgagtcgccaggtatgcaaaagtatatgaaggatttg
aagcctactgttttcgcggatcttattgctatgaatgcgttatacagaccagggccctta
gagtatataccgagttttattcgacgaaaaaacggagaagaagaaataaagtacgacctt
gatgcttgcgaagaatacctcaaagaaacgtatggtattaccgtctatcaagagcaggta
atgttactgtctcaaaaattagcaaacttcaccaagggcgaggcagacgttttgcgtaaa
gcaatgggtaaaaaacaaaaggctgtactagataaaatgaagccgaagtttatatcgcaa
gctgcagaaaaagggcatgagcctgatacgcttgaaaaaatatggaaagattgggaagca
tttgctagttacgcttttaataaatcacactctacgtgttatgcttggatagcctatcaa
acagcctatttaaaagcacattatcctgccgaatatatggctgccgtattatccaataat
atgaacgatataaagcaagtaaccttttttatggaagagtgtaaacgtatggggctagaa
gtgttaggtccagatgtaaatgaatcattttacaaatttacagttaatagtcaaaatgca
gttcgttttggtatgggagcaataaaaggagtaggatctggagcagtaaaaacaattgta
gaaggaaggaaaacagggaggtacaaatctatatttgatttggccaaacgaatagacctt
agagcagccaataaaaaagcttttgagaaccttgccttagcaggaggttttgatggtttt
gatgacacacacagggcgcagtattttcataatgaggatgaaaccagtacttttctagag
aaagcaatacgttacggggctaagtttcaggaaaacgaaaattcgtcgcaggttagtctt
tttggcgaagccagtgacgtacagatacctgagcccgtagtaccaccttgcgaagagtgg
actaccatggagaaacttgccaaagagaaagaagtggtaggtatatatttatcaggtcat
ccgttaaacgattacaaatttgaaatgaaatacttttgtaattcaaaactagaggcatta
aaagaattggataagcacatagctaaaaacttaacttttggtgggattattatcgacgtg
cagcatagaatcgctaaaaatggtaaaggttgggcttcttttattttagagggctatgat
gaaagctacgagtttaggatatacggcgaagaatatctaaaattcaggcattttttagta
gccaatagctttacttatattaaagttttggttcgtgaaggttgggtaaaccacgaaggt
aagcgcggagagccaagaatacaattcataacaatacaatacttacaagacgtacttgat
acttttgctaaaaaattagttatccagtttagcgtaaatgatttacaagatgatgtaatt
acagggttgcaaaatttgctctacactaataaaggggataactcagtaacgtttcaggta
atggagctagaaaaggtaacaaagcaagtagaaatagctgctgatatggtaaacgaacca
actgaaccatacggagataaccctgagcagcaagaaaatgcgtcgagtactgttataacc
aacgtggaggatgttcaggtaacaacaaagttaaccatgcctagccgaaaacttaaaata
aaaatatcaaacgaattgttacaagagctagagcgtttgcaaatcaattttaaactgaat
taa
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