Flavobacterium litorale: K1I41_07015
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Entry
K1I41_07015 CDS
T08396
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
flo
Flavobacterium litorale
Pathway
flo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1I41_07015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flo03019
]
K1I41_07015
03400 DNA repair and recombination proteins [BR:
flo03400
]
K1I41_07015
Enzymes [BR:
flo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1I41_07015
Messenger RNA biogenesis [BR:
flo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K1I41_07015
DNA repair and recombination proteins [BR:
flo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K1I41_07015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
QYJ67322
LinkDB
All DBs
Position
1558536..1560734
Genome browser
AA seq
732 aa
AA seq
DB search
MKSTEIDLHKELKKYFGFNKFKGLQEDVVKSIISGNNTFVIMPTGGGKSLCYQLPALALE
GTAIVVSPLIALMKNQVDAIRSLSSESGVAHVLNSSLTKTEINQVKKDITSGLTKLLYVA
PESLTKEEYVNFLRGVTISFVAIDEAHCISEWGHDFRPEYRNLRHIIKQLGDNVPVIGLT
ATATPKVQEDILKNLDMSDARVFKASFNRANLFYEVRTKTKNVESDIIRFIRQHKGKSGV
IYCLSRKKVEEIAQVLQVNGISAVPYHAGLDGKTRAKHQDMFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMSGKPIAEQ
EIGYALLQEVVAYAETSMSRRKFLLHYFGEEFDEVNGEGANMDDNIRNPKTKVEAKDQVV
TLLETIRDTKQLYKAKEVIFTLVGKVNAVIKSHRTDAQPFFGKGAAFDEKYWMALIRQVL
VEGYISKDIESYGVIKITPKGEAFLQSPSSFMMSEDHEYNDTDNEATITASKSSGTSDEV
LISMLKDLRKKVAKKLGVPPFVVFQDPSLEDMALKYPVTVEELGGVHGVGENKAKKYGKD
FVALIANYVEENDIVRPDDLVVKSTGANSGLKLYIIQNIDRKLPLNDISKAKGLDMEGLL
KEMEQIVYSGTRLNIKYWIDEILDEDQQEEIQDYFMESESDNIKAALEEFDGDYDTEELR
LMRIKFISEVAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaaccgaaattgacttacataaagagttaaaaaagtattttggttttaacaaa
ttcaaagggctacaagaagatgtcgttaaaagtataatttctggtaataatacctttgta
attatgcccacgggtggcggtaaatcgttatgttatcagctaccagcactagccctagag
ggtactgctattgtggtttcccccttaatcgcccttatgaagaatcaggtagacgctatt
cgtagcctatcgtcagaatctggtgttgcccatgtactcaattcttcacttaccaaaaca
gaaatcaatcaagttaaaaaagatattacttcagggttaacaaagctgttgtacgttgct
cctgaatcgttaacaaaggaagagtatgtaaatttccttagaggggttactatttctttc
gtggcgatagatgaggcacactgcatctcagagtggggacacgattttcgccctgagtac
cgtaacttacgccatattataaaacagttaggcgataatgtacccgttatagggcttaca
gctactgctacgcctaaagtacaggaagatatcctgaaaaatctagatatgtccgatgct
agggtttttaaagcatcgtttaacagagcgaatctcttttatgaggtacgtaccaaaaca
aagaatgtagaatcggatattatccgtttcatcaggcagcacaaaggtaaatcgggcgtt
atatactgccttagccgtaaaaaagtggaagaaattgcacaagtgttacaagttaacgga
attagtgctgtaccctaccacgctggattagatggtaaaacacgtgccaagcatcaggat
atgttccttatggaggatgtagatgtggtggtagccaccatagcttttggtatgggtata
gataagcctgacgtacgctttgtaatccaccatgatatacccaaatcgttagagagctac
taccaagaaacaggtagggcaggacgtgacggtggcgaagggcattgtttggcttattac
tcgtacaaagatattgagaagctcgaaaaatttatgtcgggcaaacccatagccgagcaa
gaaataggatatgcgttactgcaagaggtagtggcttatgccgaaacctccatgtcgcgc
cgtaaatttttgctgcattattttggagaagaatttgatgaggtaaatggtgagggtgct
aatatggatgataatattcgtaacccaaaaaccaaagtagaagcaaaagaccaagtagta
acactacttgaaacgataagagacaccaaacagttatacaaagccaaagaggtgatattt
accttagtaggcaaggtaaatgcagtaataaaatcgcaccgtaccgatgcacaacccttt
tttggtaaaggagctgcttttgacgagaagtattggatggcgcttatacgccaagtttta
gtagaaggttatatctctaaagatatagagtcctacggtgtaataaaaatcacacctaaa
ggcgaagcatttttacaaagtccatcatcgtttatgatgagtgaagaccacgagtacaat
gataccgataatgaggcaaccataacggcgtcaaaatcttctggaacctccgatgaggtg
ctaataagtatgttgaaagacttacgtaaaaaagtagctaaaaaactgggagtaccacca
tttgtagtattccaagacccttcgttggaggatatggcattaaaatatcctgtaaccgtt
gaggagcttggcggtgtacacggtgtaggcgaaaacaaggctaaaaaatatggtaaagat
tttgtagcccttatagccaattatgttgaggaaaatgatattgtacgtcctgacgacctt
gtggtaaaatctacaggagcaaactctggtttgaaattatacataatccagaatattgat
agaaaactaccgctaaatgatatttcgaaagcaaaaggactcgatatggaaggtttgctc
aaagaaatggagcaaatagtatattcgggtacgcgcctcaacattaagtattggatagat
gaaattttagacgaggatcagcaagaagaaattcaggactattttatggagtcagaatcc
gataatataaaagcagcattagaagagtttgatggcgattatgacactgaagagctgcga
ctaatgcgtattaagtttattagtgaggtagccaattaa
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