Flavobacterium litorale: K1I41_10615
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Entry
K1I41_10615 CDS
T08396
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flo
Flavobacterium litorale
Pathway
flo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1I41_10615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flo03019
]
K1I41_10615
Enzymes [BR:
flo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K1I41_10615
Messenger RNA biogenesis [BR:
flo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K1I41_10615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
Hydrolase
ERCC3_RAD25_C
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QYJ67976
UniProt:
A0ABX8VBH3
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All DBs
Position
2326067..2327335
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AA seq
422 aa
AA seq
DB search
MKFEDLNLLKNIQHALADQGYEAPTPIQAQAIPIILEDTDLVGCAQTGTGKTAAFAIPIL
NQLHRIVGSAKKVKYIRTLIITPTRELALQIGESFDTYGKYTNVRQLTIFGGVNQVPQTD
QLKKGVDVLIATPGRLLDLYKQGFINLDHLHHLVLDEADQMLDMGFIHDVKKIVKLTPDN
RQTLLFSATMPMAIRELADTFLTNPKYVSVTPVSSTAERVKQQIYFVEKSDKRKLLYHLI
RNENLSNVLVFTRTKHGADNAVKALKKNGINAGAIHGDKSQNARVRMLDAFKNKEIAVLV
ATDIAARGIDIDNLPYVINFDLPNIPETYVHRIGRTGRAGNEGIAISFCSKDELPYLKDI
EKLIRLKIKVIDGHPYPHKEETGKNAEEQKPDKRNTNNRNNSSKKSNSRKSTTSKKNKKR
WY
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagatcttaatttactgaaaaatatacagcacgcacttgctgaccaaggt
tatgaagcccctactccaatacaagcgcaagcaatacccataatactagaggatactgac
ttagtaggctgtgcacaaacaggtacaggtaaaacagccgcttttgccatacccatatta
aaccaattgcaccgtatagtaggctctgccaaaaaagtaaaatacatacgtacattaata
attacaccaacgcgcgaattagcattgcaaattggcgaaagttttgatacgtatggtaaa
tacaccaacgtacgccaattaaccatatttggaggggttaaccaagtaccacaaaccgac
caacttaaaaaaggagttgatgtacttattgcaacacctggtaggttactggatttatac
aaacaaggctttataaaccttgaccatttacaccatttggtattggatgaagccgaccaa
atgctagacatgggttttattcacgatgtaaaaaaaatagtaaaactaacacccgataat
aggcaaacgctactcttttcggctactatgcctatggcaatacgcgagcttgccgatact
tttttaacaaacccgaaatatgtttcggtaacgcctgtatcatctaccgccgagcgtgta
aaacagcaaatttactttgtagagaaaagcgataaacgcaaattattataccatttaatt
cgtaacgaaaacctatcgaatgtactagtatttacacgtactaaacatggtgcggacaat
gctgtaaaagcattaaaaaagaatggtattaatgcaggtgctatacacggcgataaatcg
caaaacgcacgggtacgaatgctagatgcctttaaaaataaggaaatagcggtattggta
gctaccgatattgcagcgcgtggaattgatattgataacttaccgtacgttataaacttt
gatttaccgaatattcctgaaacctatgtacaccgaattgggcgtacaggtagagcgggt
aacgaaggaattgctatttcattttgtagtaaagatgaattaccctatcttaaagatata
gagaaacttatacgattaaaaattaaggtgattgatgggcatccttaccctcataaagag
gaaacaggtaaaaatgcagaagaacaaaaaccagacaaaagaaataccaataatcgtaac
aatagctctaaaaaatcaaattctcgaaaatcgactacttctaaaaagaataaaaaacga
tggtactaa
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