Ferruginibacter lapsinanis: LK994_06555
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Entry
LK994_06555 CDS
T07839
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
flp
Ferruginibacter lapsinanis
Pathway
flp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
flp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK994_06555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
flp03400
]
LK994_06555 (mfd)
Enzymes [BR:
flp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK994_06555 (mfd)
DNA repair and recombination proteins [BR:
flp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LK994_06555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF7398
PqqD
Motif
Other DBs
NCBI-ProteinID:
UEG51133
LinkDB
All DBs
Position
complement(1498791..1502258)
Genome browser
AA seq
1155 aa
AA seq
DB search
MHKLLLLKNLTLSLQQMNLDVLLKEYTNDPRCFSIADRISLSQPQRILLSGLSGSASQFI
VAGVFNNPAAAQLNHLIILRDAEEAAYFHNTLENITKALNLFYFPSSFKNKKNYRLLNSS
HVMLRTEALTKLASGGNKNLIITYGEALFEKVVLSKTLAENIISIKQNDTIDVNGILSKF
VDYGFERTDFVYEPGQFAIRGGILDIYSFGNEKPYRIELFGNEVDSIRIFDPESQLSERK
LLQVNIIPNVDILQDDSGEKVSLLESLPDNTVIWTEDWQFIKEKIEQQEEDLQLFLALLK
TDSNQPVTNESDDELHIKKELSENDFVKAAAIEELMAQRHIVEFNNKSYFSRSSTSNFIH
PTFTIHPQPSFNRQFDLLIKNLKEYEAKKYNIYLFAENPKQLERLHVIFTDLKAEINVIP
VPTSIHEGFIDDDLKVVCYTDHQIFQRYHKYKVKQAFSKGKALTLKTLRELQPGDYVTHI
DHGVGVYSGLQKINANGKMQEAVRIQYKDGDLLYVNISSLHKIGKYSGKEGSIPKMNKLG
SEVWGKLKEKTKKQVKDIATDLIKLYAQRKAQEGFAHSPDNYMQTELEASFIYEDTPDQN
KATIDVKRDMERPSPMDRLVCGDVGFGKTEVAIRAAFKSCCDGKQAAVLVPTTILAYQHY
KTFGERLKDFPVTVDFINRFKTAKEKKETLLKLAEGKIDIIIGTHALLSKDVKFKDLGVM
IIDEEQKFGVAAKEKLKQLRTTVDSLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPI
QTEVMVFNEDAIRDIIYYETERGGQVFFIHNRVNGLAEMKGLIQSLCPDISIAFAHGQMD
GDQLEDTILDFMDKKYDVLVCTNIVESGVDIPNVNTIIVNNAHQFGLSDLHQLRGRVGRS
NKKAFCYLLAPPMSTLPPDSRKRLSTLEQYSDLGSGFQIAMRDLDIRGAGNMLGGEQSGF
IAEIGFEMYQKILDEAIRELKRTEFKDLYKEEISQQDDFVSDCSIDTDLEILIPDSYVES
ITERLSLYSRLDNCETEQELTDFHTEMKDRFGPIPAPVEDLFTTVRCRKMAVELGFEKIL
LKDATLRCFFVSNPDSPYFQSETFTGILQFLQKGTNKAKLKQVGKNGILVVESMLSMEML
HKFLTRMLQSIKTVT
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaattattacttctaaaaaatcttactttatctttgcagcagatgaacctggat
gtgttgctgaaagagtatacaaatgacccccgctgtttttcaatagcggacaggatctct
ttgtctcaacctcaaagaattcttctttctggccttagcggcagtgcttcacaatttatt
gtagccggcgttttcaacaatcctgctgcggcgcaattaaatcacctcatcattttaaga
gacgcagaagaagcagcttattttcataatactcttgaaaacatcaccaaggccttaaat
cttttttattttccttcttcctttaagaataaaaaaaattacagacttctcaatagtagt
catgtaatgttgcgtacagaagcgctgacaaaattagccagcggcggaaataaaaacctg
atcattacttatggtgaagcattatttgaaaaagtagttttatcaaaaacccttgcggaa
aatatcatttctataaaacaaaatgacaccattgatgtaaatggtattttatcaaaattt
gtcgactacggttttgaaagaaccgattttgtgtatgagcccggacaatttgctattcgt
ggaggtatattagatatttattcttttggaaacgaaaaaccatacaggatagaattgttt
ggtaacgaggttgacagtatcagaatatttgatcctgaatctcaattgagtgaacggaaa
ttattacaggtaaacattattcctaatgtagatattttgcaggatgacagtggcgaaaaa
gtgtcgttattggaatcattgccggataatactgttatctggactgaagactggcaattt
attaaagaaaaaattgaacaacaggaagaagaccttcagctctttttagcattacttaag
accgatagcaatcaacctgtaacaaatgaaagtgatgatgaattacacataaagaaagag
ctgagtgaaaatgattttgtaaaagcagcggctattgaggagctgatggctcagaggcat
attgtagaatttaataacaaatcttacttctccagatcgtcaacctccaacttcatacat
ccaacatttactattcatccgcaaccttctttcaatcgtcagtttgacctgctgataaaa
aacctgaaagaatacgaagcaaaaaaatacaatatttatctttttgctgaaaacccgaaa
caactggagagacttcatgtaattttcacagacctgaaggctgagataaacgtaattcca
gtgcctaccagtattcatgaaggatttatagatgatgacctgaaagttgtatgctatact
gatcatcagatctttcaacgatatcataaatacaaagtaaaacaagcgttcagcaaaggg
aaagctctcacattaaaaactttaagggaattacagcccggtgattatgttacgcatatc
gatcatggcgtaggcgtgtatagtgggttacagaagatcaacgctaatggcaaaatgcag
gaagctgttcggatacaatataaagacggagatcttttgtatgtgaacatttcttcttta
cataaaataggtaaatacagcggcaaggaaggaagtattcccaaaatgaataaactgggc
agtgaggtttggggcaagctgaaagaaaagaccaagaaacaggtaaaagatattgcaaca
gaccttatcaaattatatgctcaacgtaaagctcaggaaggctttgctcatagtcctgat
aactatatgcaaaccgaactggaagctagttttatttacgaagacacccctgatcagaat
aaagcaaccattgatgtaaaaagagatatggaaagaccatctccgatggatcgtttggtt
tgcggagatgttggttttggaaaaactgaagtagccataagggcagcattcaaaagttgt
tgtgatggcaaacaggcagcagtattggttcctaccactatattagcttatcagcattat
aaaacttttggcgaaagattgaaagattttcccgtaacagtagattttatcaatcgtttt
aaaactgccaaagaaaaaaaagaaacactgctaaaattagcagaaggaaaaatagacatc
atcatcggtacacatgccttactaagtaaagatgtcaagttcaaagacctgggagtaatg
atcattgatgaggaacaaaaatttggtgtggccgcaaaagaaaaattaaaacaattaaga
actacagtagatagtttaacactaacagccacgcctataccaagaacattacagtttagt
ttaatgggagccagagaccttagtatcatcaatacacctccgcctaacaggcagcccata
caaactgaagtaatggtctttaatgaagatgcaatcagggatattatatattatgaaaca
gaacggggaggacaggttttcttcatacacaatcgtgtaaatggtttagcagaaatgaag
ggattgattcaaagtttatgccccgacatcagcatcgcatttgctcatggacaaatggat
ggtgatcagttagaagatactatcctcgatttcatggataaaaaatatgatgtactggtt
tgcacaaacattgtagagagtggtgtcgacatccctaatgtaaatacgatcattgtaaac
aatgctcatcaattcggattaagcgacctgcatcagttacgtggaagagttggccgtagc
aataaaaaagcattttgttatttactggccccgccaatgagtacacttcctcctgacagc
agaaaacgtttatctacattagaacaatacagcgatctgggaagtggtttccagatagcg
atgagagatctggatatccgtggcgccggtaatatgttgggtggagaacaaagtggtttt
attgcagagatcggtttcgaaatgtatcaaaagatcttggatgaagccatcagagaattg
aaacgcaccgaatttaaagacttatacaaggaagaaatatcacaacaagatgattttgta
agtgattgctcaatcgatacagacctggaaatattgatccctgatagttatgtggaaagt
atcacagaaagattaagtttatacagccggttagacaattgtgaaacagaacaggagtta
accgactttcatacagaaatgaaggatcgatttggtccgataccagctcctgtggaagac
ctctttaccacagttcgatgcagaaaaatggcggttgaactgggctttgaaaaaatatta
ttgaaagacgccacactcagatgcttttttgtgagcaatcccgatagcccttatttccaa
agcgaaacatttacaggcattttgcaatttttgcaaaagggaacaaataaagcaaagctg
aaacaagtaggcaaaaacgggatattggttgtagaaagtatgttgagcatggaaatgcta
cataaatttttgaccagaatgttacagagtataaaaactgttacctaa
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